Transcriptome and genome size analysis of the venus flytrap

Michael Krogh Jensen, Josef Korbinian Vogt, Simon Bressendorff, Andaine Seguin-Orlando, Morten Petersen, Thomas Sicheritz-Pontén, John Mundy

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    Abstract

    The insectivorous Venus flytrap (Dionaea muscipula) is renowned from Darwin's studies of plant carnivory and the origins of species. To provide tools to analyze the evolution and functional genomics of D. muscipula, we sequenced a normalized cDNA library synthesized from mRNA isolated from D. muscipula flowers and traps. Using the Oases transcriptome assembler 79,165,657 quality trimmed reads were assembled into 80,806 cDNA contigs, with an average length of 679 bp and an N50 length of 1,051 bp. A total of 17,047 unique proteins were identified, and assigned to Gene Ontology (GO) and classified into functional categories. A total of 15,547 full-length cDNA sequences were identified, from which open reading frames were detected in 10,941. Comparative GO analyses revealed that D. muscipula is highly represented in molecular functions related to catalytic, antioxidant, and electron carrier activities. Also, using a single copy sequence PCR-based method, we estimated that the genome size of D. muscipula is approx. 3 Gb. Our genome size estimate and transcriptome analyses will contribute to future research on this fascinating, monotypic species and its heterotrophic adaptations.
    Original languageEnglish
    Article numbere0123887
    JournalP L o S One
    Volume10
    Issue number4
    Number of pages13
    ISSN1932-6203
    DOIs
    Publication statusPublished - 2015

    Cite this

    Jensen, M. K., Vogt, J. K., Bressendorff, S., Seguin-Orlando, A., Petersen, M., Sicheritz-Pontén, T., & Mundy, J. (2015). Transcriptome and genome size analysis of the venus flytrap. P L o S One, 10(4), [e0123887]. https://doi.org/10.1371/journal.pone.0123887