The gold-standard genome of Aspergillus niger NRRL 3 enables a detailed view of the diversity of sugar catabolism in fungi

M. V. Aguilar-Pontes, J. Brandl, E. McDonnell, K. Strasser, T.T.M. Nguyen, R. Riley, S. Mondo, A. Salamov, J.L. Nybo, T.C. Vesth, I.V. Grigoriev, M.R. Andersen, A. Tsang*, R.P. de Vries

*Corresponding author for this work

Research output: Contribution to journalJournal articleResearchpeer-review

262 Downloads (Pure)

Abstract

The fungal kingdom is too large to be discovered exclusively by classical genetics. The access to omics data opens a new opportunity to study the diversity within the fungal kingdom and how adaptation to new environments shapes fungal metabolism. Genomes are the foundation of modern science but their quality is crucial when analysing omics data. In this study, we demonstrate how one gold-standard genome can improve functional prediction across closely related species to be able to identify key enzymes, reactions and pathways with the focus on primary carbon metabolism. Based on this approach we identified alternative genes encoding various steps of the different sugar catabolic pathways, and as such provided leads for functional studies into this topic. We also revealed significant diversity with respect to genome content, although this did not always correlate to the ability of the species to use the corresponding sugar as a carbon source.
Original languageEnglish
JournalStudies in Mycology
Volume91
Pages (from-to)61-78
ISSN0166-0616
DOIs
Publication statusPublished - 2018

Keywords

  • Aspergillus
  • Genomic diversity
  • Gold standard genome
  • Sugar catabolism

Fingerprint Dive into the research topics of 'The gold-standard genome of <i>Aspergillus niger</i> NRRL 3 enables a detailed view of the diversity of sugar catabolism in fungi'. Together they form a unique fingerprint.

Cite this