The Genome Atlas Resource

Matloob Azam Qureshi, Eva Rotenberg, Hans Henrik Stærfeldt, Lena Hansson, David Ussery

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    Abstract

    Abstract. The Genome Atlas is a resource for addressing the challenges of synchronising prokaryotic genomic sequence data from multiple public repositories. This resource can integrate bioinformatic analyses in various data format and quality. Existing open source tools have been used together with scripts and algorithms developed in a variety of programming languages at the Centre for Biological Sequence Analysis in order to create a three-tier software application for genome analysis. The results are made available via a web interface developed in Java, PHP and Perl CGI. User-configurable and dynamic views of Chromosomal maps are made possible through an updated GeneWiz browser (version 0.94) which uses Java to allow rapid zooming in and out of the atlases.
    Original languageEnglish
    Title of host publicationInternational Conference on Computational Systems-Biology and Bioinformatics, Proceedings
    Volume115
    PublisherSpringer
    Publication date2010
    Pages149-158
    Publication statusPublished - 2010
    EventInternational Conference on Computational Systems-Biology and Bioinformatics - Bangkok
    Duration: 1 Jan 2010 → …

    Conference

    ConferenceInternational Conference on Computational Systems-Biology and Bioinformatics
    CityBangkok
    Period01/01/2010 → …

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