The Genome Atlas Resource

Matloob Azam Qureshi, Eva Rotenberg, Hans Henrik Stærfeldt, Lena Hansson, David Ussery

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    Abstract. The Genome Atlas is a resource for addressing the challenges of synchronising prokaryotic genomic sequence data from multiple public repositories. This resource can integrate bioinformatic analyses in various data format and quality. Existing open source tools have been used together with scripts and algorithms developed in a variety of programming languages at the Centre for Biological Sequence Analysis in order to create a three-tier software application for genome analysis. The results are made available via a web interface developed in Java, PHP and Perl CGI. User-configurable and dynamic views of Chromosomal maps are made possible through an updated GeneWiz browser (version 0.94) which uses Java to allow rapid zooming in and out of the atlases.
    Original languageEnglish
    Title of host publicationInternational Conference on Computational Systems-Biology and Bioinformatics, Proceedings
    Publication date2010
    Publication statusPublished - 2010
    Event1st International Conference on Computational Systems-Biology and Bioinformatics - Bangkok, Thailand
    Duration: 3 Nov 20105 Nov 2010
    Conference number: 1


    Conference1st International Conference on Computational Systems-Biology and Bioinformatics


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