The bio.tools registry of software tools and data resources for the life sciences

Jon Ison; Hans Ienasescu; Piotr Jaroslaw Chmura; Emil Karol Rydza; Herve Menager; Matuš Kalaš; Veit Schwammle; Björn Gruning; Niall Beard; Rodrigo Lopez; Severine Duvaud; Heinz Stockinger; Bengt Persson; Radka Svobodova Vařekova; Tomaš Raček; Jiři Vondrašek; Hedi Peterson; Ahto Salumets; Inge Jonassen; Rob Hooft; Tommi Nyronen; Alfonso Valencia; Salvador Capella; Josep Gelpi; Federico Zambelli; Babis Savakis; Brane Leskošek; Kristoffer Rapacki; Christophe Blanchet; Rafael Jimenez; Arlindo Oliveira; Gert Vriend; Olivier Collin; Jacques Van Helden; Peter Løngreen; Søren Brunak

doi:10.1186/s13059-019-1772-6

The bio.tools registry of software tools and data resources for the life sciences

Jon Ison^*
, Hans Ienasescu
, Piotr Jaroslaw Chmura
, Emil Karol Rydza
, Herve Menager
, Matuš Kalaš
, Veit Schwammle
, Björn Gruning
, Niall Beard
, Rodrigo Lopez
, Severine Duvaud
, Heinz Stockinger
, Bengt Persson
, Radka Svobodova Vařekova
, Tomaš Raček
, Jiři Vondrašek
, Hedi Peterson
, Ahto Salumets
, Inge Jonassen
, Rob Hooft

Tommi Nyronen, Alfonso Valencia, Salvador Capella, Josep Gelpi, Federico Zambelli, Babis Savakis, Brane Leskošek, Kristoffer Rapacki, Christophe Blanchet, Rafael Jimenez, Arlindo Oliveira, Gert Vriend, Olivier Collin, Jacques Van Helden, Peter Løngreen, Søren Brunak

^*Corresponding author for this work

University of Copenhagen
Institut Pasteur
University of Bergen
University of Southern Denmark
University of Freiburg
University of Manchester
Wellcome Trust Genome Campus
Swiss Institute of Bioinformatics
Uppsala University
Masaryk University
Czech Academy of Sciences
University of Tartu
Dutch Techcentre for Life Sciences
CSC - IT Center for Science Ltd.
Barcelona Supercomputing Center-Centro Nacional de Supercomputación
University of Milano
Alexander Fleming Biomedical Sciences Research Center
University of Ljubljana
CNRS
Instituto Superior Técnico
Radboud University Medical Center
Université de Rennes
Aix-Marseille Université

Research output: Contribution to journal › Journal article › Research › peer-review

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Abstract

Bioinformaticians and biologists rely increasingly upon workflows for the flexible utilization of the many life science tools that are needed to optimally convert data into knowledge. We outline a pan-European enterprise to provide a catalogue (https://bio.tools) of tools and databases that can be used in these workflows. bio.tools not only lists where to find resources, but also provides a wide variety of practical information.

Original language	English
Article number	164
Journal	Genome Biology
Volume	20
Issue number	1
Number of pages	4
ISSN	1474-7596
DOIs	https://doi.org/10.1186/s13059-019-1772-6
Publication status	Published - 2019

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Ison, J., Ienasescu, H., Chmura, P. J., Rydza, E. K., Menager, H., Kalaš, M., Schwammle, V., Gruning, B., Beard, N., Lopez, R., Duvaud, S., Stockinger, H., Persson, B., Vařekova, R. S., Raček, T., Vondrašek, J., Peterson, H., Salumets, A., Jonassen, I., ... Brunak, S. (2019). The bio.tools registry of software tools and data resources for the life sciences. Genome Biology, 20(1), Article 164. https://doi.org/10.1186/s13059-019-1772-6

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title = "The bio.tools registry of software tools and data resources for the life sciences",

abstract = "Bioinformaticians and biologists rely increasingly upon workflows for the flexible utilization of the many life science tools that are needed to optimally convert data into knowledge. We outline a pan-European enterprise to provide a catalogue (https://bio.tools) of tools and databases that can be used in these workflows. bio.tools not only lists where to find resources, but also provides a wide variety of practical information.",

author = "Jon Ison and Hans Ienasescu and Chmura, \{Piotr Jaroslaw\} and Rydza, \{Emil Karol\} and Herve Menager and Matu{\v s} Kala{\v s} and Veit Schwammle and Bj{\"o}rn Gruning and Niall Beard and Rodrigo Lopez and Severine Duvaud and Heinz Stockinger and Bengt Persson and Va{\v r}ekova, \{Radka Svobodova\} and Toma{\v s} Ra{\v c}ek and Ji{\v r}i Vondra{\v s}ek and Hedi Peterson and Ahto Salumets and Inge Jonassen and Rob Hooft and Tommi Nyronen and Alfonso Valencia and Salvador Capella and Josep Gelpi and Federico Zambelli and Babis Savakis and Brane Lesko{\v s}ek and Kristoffer Rapacki and Christophe Blanchet and Rafael Jimenez and Arlindo Oliveira and Gert Vriend and Olivier Collin and \{Van Helden\}, Jacques and Peter L{\o}ngreen and S{\o}ren Brunak",

year = "2019",

doi = "10.1186/s13059-019-1772-6",

language = "English",

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journal = "Genome Biology",

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Ison, J , Ienasescu, H, Chmura, PJ, Rydza, EK, Menager, H, Kalaš, M, Schwammle, V, Gruning, B, Beard, N, Lopez, R, Duvaud, S, Stockinger, H, Persson, B, Vařekova, RS, Raček, T, Vondrašek, J, Peterson, H, Salumets, A, Jonassen, I, Hooft, R, Nyronen, T, Valencia, A, Capella, S, Gelpi, J, Zambelli, F, Savakis, B, Leskošek, B, Rapacki, K, Blanchet, C, Jimenez, R, Oliveira, A, Vriend, G, Collin, O, Van Helden, J, Løngreen, P & Brunak, S 2019, 'The bio.tools registry of software tools and data resources for the life sciences', Genome Biology, vol. 20, no. 1, 164. https://doi.org/10.1186/s13059-019-1772-6

TY - JOUR

T1 - The bio.tools registry of software tools and data resources for the life sciences

AU - Ison, Jon

AU - Ienasescu, Hans

AU - Chmura, Piotr Jaroslaw

AU - Rydza, Emil Karol

AU - Menager, Herve

AU - Kalaš, Matuš

AU - Schwammle, Veit

AU - Gruning, Björn

AU - Beard, Niall

AU - Lopez, Rodrigo

AU - Duvaud, Severine

AU - Stockinger, Heinz

AU - Persson, Bengt

AU - Vařekova, Radka Svobodova

AU - Raček, Tomaš

AU - Vondrašek, Jiři

AU - Peterson, Hedi

AU - Salumets, Ahto

AU - Jonassen, Inge

AU - Hooft, Rob

AU - Nyronen, Tommi

AU - Valencia, Alfonso

AU - Capella, Salvador

AU - Gelpi, Josep

AU - Zambelli, Federico

AU - Savakis, Babis

AU - Leskošek, Brane

AU - Rapacki, Kristoffer

AU - Blanchet, Christophe

AU - Jimenez, Rafael

AU - Oliveira, Arlindo

AU - Vriend, Gert

AU - Collin, Olivier

AU - Van Helden, Jacques

AU - Løngreen, Peter

AU - Brunak, Søren

PY - 2019

Y1 - 2019

N2 - Bioinformaticians and biologists rely increasingly upon workflows for the flexible utilization of the many life science tools that are needed to optimally convert data into knowledge. We outline a pan-European enterprise to provide a catalogue (https://bio.tools) of tools and databases that can be used in these workflows. bio.tools not only lists where to find resources, but also provides a wide variety of practical information.

AB - Bioinformaticians and biologists rely increasingly upon workflows for the flexible utilization of the many life science tools that are needed to optimally convert data into knowledge. We outline a pan-European enterprise to provide a catalogue (https://bio.tools) of tools and databases that can be used in these workflows. bio.tools not only lists where to find resources, but also provides a wide variety of practical information.

U2 - 10.1186/s13059-019-1772-6

DO - 10.1186/s13059-019-1772-6

M3 - Journal article

C2 - 31405382

SN - 1474-7596

VL - 20

JO - Genome Biology

JF - Genome Biology

IS - 1

M1 - 164

ER -

The bio.tools registry of software tools and data resources for the life sciences

Abstract

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