The antiSMASH database version 2: a comprehensive resource on secondary metabolite biosynthetic gene clusters

Kai Blin, Victòria Pascal Andreu, Emmanuel L C de Los Santos, Francesco Del Carratore, Sang Yup Lee, Marnix H. Medema, Tilmann Weber*

*Corresponding author for this work

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Abstract

Natural products originating from microorganisms are frequently used in antimicrobial and anticancer drugs, pesticides, herbicides or fungicides. In the last years, the increasing availability of microbial genome data has made it possible to access the wealth of biosynthetic clusters responsible for the production of these compounds by genome mining. antiSMASH is one of the most popular tools in this field. The antiSMASH database provides pre-computed antiSMASH results for many publicly available microbial genomes and allows for advanced cross-genome searches. The current version 2 of the antiSMASH database contains annotations for 6200 full bacterial genomes and 18,576 bacterial draft genomes and is available at https://antismash-db.secondarymetabolites.org/.
Original languageEnglish
JournalNucleic acids research
Volume47
Issue numberD1
Pages (from-to)D625–D630
ISSN0305-1048
DOIs
Publication statusPublished - 2019

Cite this

Blin, Kai ; Pascal Andreu, Victòria ; de Los Santos, Emmanuel L C ; Del Carratore, Francesco ; Lee, Sang Yup ; Medema, Marnix H. ; Weber, Tilmann. / The antiSMASH database version 2: a comprehensive resource on secondary metabolite biosynthetic gene clusters. In: Nucleic acids research. 2019 ; Vol. 47, No. D1. pp. D625–D630.
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The antiSMASH database version 2: a comprehensive resource on secondary metabolite biosynthetic gene clusters. / Blin, Kai; Pascal Andreu, Victòria; de Los Santos, Emmanuel L C; Del Carratore, Francesco; Lee, Sang Yup; Medema, Marnix H.; Weber, Tilmann.

In: Nucleic acids research, Vol. 47, No. D1, 2019, p. D625–D630.

Research output: Contribution to journalJournal articleResearchpeer-review

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AU - Blin, Kai

AU - Pascal Andreu, Victòria

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AU - Medema, Marnix H.

AU - Weber, Tilmann

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