The absorption spectrum of guanine based radicals: a comparative computational analysis

Lara Martínez Fernández, Javier Cerezo, Haritha Asha, Fabrizio Santoro, Sonia Coriani, Roberto Improta*

*Corresponding author for this work

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Abstract

The excited states of the three radical derivatives of guanine, i.e. guanine cation (G+) and its two main deprotonated derivatives (G-H1 and G-H2) have been characterized in the Franck-Condon region by TD-DFT, using different functionals, CASPT2, and EOM-EE-CCSD calculations. In the gas phase, all the methods provide a similar description of the main spectral features, the pictures provided by TD-DFT, with long range corrected functionals, and EOM-EE-CCSD being very close. Solvent effects are then taken into account by a mixed discrete-continuum approach, including five water molecules of the first solvation shell and the Polarizable Continuum Model (PCM). The vibronic absorption line-width has finally been simulated at the TD-M052X level by a time dependent method within the harmonic approximation. The resulting absorption spectra are in good agreement with their experimental counterparts, providing useful indications on the use of PCM/TD-DFT based approaches to interpret the spectra of guanine based radicals within DNA.
Original languageEnglish
JournalChemPhotoChem
Volume3
Issue number9
Pages (from-to)846-855
Number of pages10
ISSN2367-0932
DOIs
Publication statusPublished - 2019

Keywords

  • Ab inito calculations
  • Computational photochemistry
  • DNA
  • Organic radicals
  • Quantum chemisty

Cite this

Martínez Fernández, L., Cerezo, J., Asha, H., Santoro, F., Coriani, S., & Improta, R. (2019). The absorption spectrum of guanine based radicals: a comparative computational analysis. ChemPhotoChem, 3(9), 846-855. https://doi.org/10.1002/cptc.201900107