Ten years of CAZypedia: a living encyclopedia of carbohydrate-active enzymes

Wade Abbott; Orly Alber; Ed bayer; Jean-Guy Berrin; Alisdair  Boraston; Harry Brumer; Ryszard Brzezinski; Anthony  Clarke; Beatrice Cobucci-Ponzano; Darrell Cockburn; Pedro  Coutinho; Mirjam Czjzek; Bareket Dassa; Gideon John Davies; Vincent Eijsink; Jens Eklöf; Alfons Felice; Elisabeth Ficko-Blean; Geoff Fincher; Thierry Fontaine; Zui Fujimoto; Kiyotaka Fujita; Shinya Fushinobu; Harry  Gilbert; Tracey  Gloster; Ethan Goddard-Borger; Ian Greig; Jan-Hendrik Hehemann; Glyn Hemsworth; Bernard Henrissat; Masafumi Hidaka; Ramon Hurtado-Guerrero; Kiyohiko Igarashi; Takuya Ishida; Štefan Janeček; Seino Jongkees; Nathalie Juge; Satoshi Kaneko; Takane Katayama; Motomitsu Kitaoka; Naotake Konno; Daniel Kracher; Anna Kulminskaya; Alicia Lammerts van Bueren; Stine Larsen; Junho Lee; Markus  Linder; Leila Lo Leggio; Roland Ludwig; Ana Luis; Mirko Maksimainen; Brian Mark; Richard McLean; Gurvan Michel; Cedric Montanier; Marco Moracci; Haruhide Mori; Hiroyuki Nakai; Wim Nerinckx; Takayuki  Ohnuma; Richard Pickersgill; Kathleen Piens; Tirso Pons; Etienne Rebuffet; Peter Reilly; Magali Remaud-Simeon; Brian Rempel; Kyle Robinson; David  Rose; Juha Rouvinen; Wataru  Saburi; Yuichi  Sakamoto; Mats Sandgren; Fathima Shaikh; Yuval Shoham; Franz St. John; Jerry Stahlberg; Michael  Suits; Gerlind Sulzenbacher; Tomomi Sumida; Ryuichiro Suzuki; Birte Svensson; Toki Taira; Ed Taylor; Takashi Tonozuka; Breeanna Urbanowicz; Gustav Vaaje-Kolstad; Wim Van den Ende; Annabelle Varrot; Maxime Verluys; Florence Vincent; David Vocadlo; Warren Wakarchuk; Tom Wennekes; Rohan  Williams; Spencer Williams; Casper Wilkens; David Wilson; Stephen  Withers; Katsuro Yaoi; Vivian Yip; Ran Zhang

doi:10.1093/glycob/cwx089

Ten years of CAZypedia: a living encyclopedia of carbohydrate-active enzymes

Wade Abbott, Orly Alber, Ed bayer, Jean-Guy Berrin, Alisdair Boraston, Harry Brumer, Ryszard Brzezinski, Anthony Clarke, Beatrice Cobucci-Ponzano, Darrell Cockburn, Pedro Coutinho, Mirjam Czjzek, Bareket Dassa, Gideon John Davies, Vincent Eijsink, Jens Eklöf, Alfons Felice, Elisabeth Ficko-Blean, Geoff Fincher, Thierry FontaineZui Fujimoto, Kiyotaka Fujita, Shinya Fushinobu, Harry Gilbert, Tracey Gloster, Ethan Goddard-Borger, Ian Greig, Jan-Hendrik Hehemann, Glyn Hemsworth, Bernard Henrissat, Masafumi Hidaka, Ramon Hurtado-Guerrero, Kiyohiko Igarashi, Takuya Ishida, Štefan Janeček, Seino Jongkees, Nathalie Juge, Satoshi Kaneko, Takane Katayama, Motomitsu Kitaoka, Naotake Konno, Daniel Kracher, Anna Kulminskaya, Alicia Lammerts van Bueren, Stine Larsen, Junho Lee, Markus Linder, Leila Lo Leggio, Roland Ludwig, Ana Luis, Mirko Maksimainen, Brian Mark, Richard McLean, Gurvan Michel, Cedric Montanier, Marco Moracci, Haruhide Mori, Hiroyuki Nakai, Wim Nerinckx, Takayuki Ohnuma, Richard Pickersgill, Kathleen Piens, Tirso Pons, Etienne Rebuffet, Peter Reilly, Magali Remaud-Simeon, Brian Rempel, Kyle Robinson, David Rose, Juha Rouvinen, Wataru Saburi, Yuichi Sakamoto, Mats Sandgren, Fathima Shaikh, Yuval Shoham, Franz St. John, Jerry Stahlberg, Michael Suits, Gerlind Sulzenbacher, Tomomi Sumida, Ryuichiro Suzuki, Birte Svensson, Toki Taira, Ed Taylor, Takashi Tonozuka, Breeanna Urbanowicz, Gustav Vaaje-Kolstad, Wim Van den Ende, Annabelle Varrot, Maxime Verluys, Florence Vincent, David Vocadlo, Warren Wakarchuk, Tom Wennekes, Rohan Williams, Spencer Williams, Casper Wilkens, David Wilson, Stephen Withers, Katsuro Yaoi, Vivian Yip, Ran Zhang

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Abstract

CAZypedia was initiated in 2007 to create a comprehensive, living encyclopedia of the carbohydrate-active enzymes (CAZymes) and associated carbohydrate-binding modules involved in the synthesis, modification and degradation of complex carbohydrates. CAZypedia is closely connected with the actively curated CAZy database, which provides a sequence-based foundation for the biochemical, mechanistic and structural characterization of these diverse proteins. Now celebrating its 10th anniversary online, CAZypedia is a successful example of dynamic, community-driven and expert-based biocuration.

Original language	English
Journal	Glycobiology
Volume	28
Issue number	1
Pages (from-to)	3-8
ISSN	0959-6658
DOIs	https://doi.org/10.1093/glycob/cwx089
Publication status	Published - 2018

Keywords

Biocuration
Bioinformatics
Carbohydrate-active enzymes
Glycoscience
Glycobiology

Access to Document

10.1093/glycob/cwx089

Accepted_manuscriptAccepted author manuscript, 1.17 MB

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Abbott, W., Alber, O., bayer, E., Berrin, J.-G., Boraston, A., Brumer, H., Brzezinski, R., Clarke, A., Cobucci-Ponzano, B., Cockburn, D., Coutinho, P., Czjzek, M., Dassa, B., Davies, G. J., Eijsink, V., Eklöf, J., Felice, A., Ficko-Blean, E., Fincher, G., ... Zhang, R. (2018). Ten years of CAZypedia: a living encyclopedia of carbohydrate-active enzymes. Glycobiology, 28(1), 3-8. https://doi.org/10.1093/glycob/cwx089

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abstract = "CAZypedia was initiated in 2007 to create a comprehensive, living encyclopedia of the carbohydrate-active enzymes (CAZymes) and associated carbohydrate-binding modules involved in the synthesis, modification and degradation of complex carbohydrates. CAZypedia is closely connected with the actively curated CAZy database, which provides a sequence-based foundation for the biochemical, mechanistic and structural characterization of these diverse proteins. Now celebrating its 10th anniversary online, CAZypedia is a successful example of dynamic, community-driven and expert-based biocuration. ",

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author = "Wade Abbott and Orly Alber and Ed bayer and Jean-Guy Berrin and Alisdair Boraston and Harry Brumer and Ryszard Brzezinski and Anthony Clarke and Beatrice Cobucci-Ponzano and Darrell Cockburn and Pedro Coutinho and Mirjam Czjzek and Bareket Dassa and Davies, {Gideon John} and Vincent Eijsink and Jens Ekl{\"o}f and Alfons Felice and Elisabeth Ficko-Blean and Geoff Fincher and Thierry Fontaine and Zui Fujimoto and Kiyotaka Fujita and Shinya Fushinobu and Harry Gilbert and Tracey Gloster and Ethan Goddard-Borger and Ian Greig and Jan-Hendrik Hehemann and Glyn Hemsworth and Bernard Henrissat and Masafumi Hidaka and Ramon Hurtado-Guerrero and Kiyohiko Igarashi and Takuya Ishida and {\v S}tefan Jane{\v c}ek and Seino Jongkees and Nathalie Juge and Satoshi Kaneko and Takane Katayama and Motomitsu Kitaoka and Naotake Konno and Daniel Kracher and Anna Kulminskaya and {Lammerts van Bueren}, Alicia and Stine Larsen and Junho Lee and Markus Linder and {Lo Leggio}, Leila and Roland Ludwig and Ana Luis and Mirko Maksimainen and Brian Mark and Richard McLean and Gurvan Michel and Cedric Montanier and Marco Moracci and Haruhide Mori and Hiroyuki Nakai and Wim Nerinckx and Takayuki Ohnuma and Richard Pickersgill and Kathleen Piens and Tirso Pons and Etienne Rebuffet and Peter Reilly and Magali Remaud-Simeon and Brian Rempel and Kyle Robinson and David Rose and Juha Rouvinen and Wataru Saburi and Yuichi Sakamoto and Mats Sandgren and Fathima Shaikh and Yuval Shoham and {St. John}, Franz and Jerry Stahlberg and Michael Suits and Gerlind Sulzenbacher and Tomomi Sumida and Ryuichiro Suzuki and Birte Svensson and Toki Taira and Ed Taylor and Takashi Tonozuka and Breeanna Urbanowicz and Gustav Vaaje-Kolstad and {Van den Ende}, Wim and Annabelle Varrot and Maxime Verluys and Florence Vincent and David Vocadlo and Warren Wakarchuk and Tom Wennekes and Rohan Williams and Spencer Williams and Casper Wilkens and David Wilson and Stephen Withers and Katsuro Yaoi and Vivian Yip and Ran Zhang",

year = "2018",

doi = "10.1093/glycob/cwx089",

language = "English",

volume = "28",

pages = "3--8",

journal = "Glycobiology",

issn = "0959-6658",

publisher = "Oxford University Press",

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TY - JOUR

T1 - Ten years of CAZypedia: a living encyclopedia of carbohydrate-active enzymes

AU - Abbott, Wade

AU - Alber, Orly

AU - bayer, Ed

AU - Berrin, Jean-Guy

AU - Boraston, Alisdair

AU - Brumer, Harry

AU - Brzezinski, Ryszard

AU - Clarke, Anthony

AU - Cobucci-Ponzano, Beatrice

AU - Cockburn, Darrell

AU - Coutinho, Pedro

AU - Czjzek, Mirjam

AU - Dassa, Bareket

AU - Davies, Gideon John

AU - Eijsink, Vincent

AU - Eklöf, Jens

AU - Felice, Alfons

AU - Ficko-Blean, Elisabeth

AU - Fincher, Geoff

AU - Fontaine, Thierry

AU - Fujimoto, Zui

AU - Fujita, Kiyotaka

AU - Fushinobu, Shinya

AU - Gilbert, Harry

AU - Gloster, Tracey

AU - Goddard-Borger, Ethan

AU - Greig, Ian

AU - Hehemann, Jan-Hendrik

AU - Hemsworth, Glyn

AU - Henrissat, Bernard

AU - Hidaka, Masafumi

AU - Hurtado-Guerrero, Ramon

AU - Igarashi, Kiyohiko

AU - Ishida, Takuya

AU - Janeček, Štefan

AU - Jongkees, Seino

AU - Juge, Nathalie

AU - Kaneko, Satoshi

AU - Katayama, Takane

AU - Kitaoka, Motomitsu

AU - Konno, Naotake

AU - Kracher, Daniel

AU - Kulminskaya, Anna

AU - Lammerts van Bueren, Alicia

AU - Larsen, Stine

AU - Lee, Junho

AU - Linder, Markus

AU - Lo Leggio, Leila

AU - Ludwig, Roland

AU - Luis, Ana

AU - Maksimainen, Mirko

AU - Mark, Brian

AU - McLean, Richard

AU - Michel, Gurvan

AU - Montanier, Cedric

AU - Moracci, Marco

AU - Mori, Haruhide

AU - Nakai, Hiroyuki

AU - Nerinckx, Wim

AU - Ohnuma, Takayuki

AU - Pickersgill, Richard

AU - Piens, Kathleen

AU - Pons, Tirso

AU - Rebuffet, Etienne

AU - Reilly, Peter

AU - Remaud-Simeon, Magali

AU - Rempel, Brian

AU - Robinson, Kyle

AU - Rose, David

AU - Rouvinen, Juha

AU - Saburi, Wataru

AU - Sakamoto, Yuichi

AU - Sandgren, Mats

AU - Shaikh, Fathima

AU - Shoham, Yuval

AU - St. John, Franz

AU - Stahlberg, Jerry

AU - Suits, Michael

AU - Sulzenbacher, Gerlind

AU - Sumida, Tomomi

AU - Suzuki, Ryuichiro

AU - Svensson, Birte

AU - Taira, Toki

AU - Taylor, Ed

AU - Tonozuka, Takashi

AU - Urbanowicz, Breeanna

AU - Vaaje-Kolstad, Gustav

AU - Van den Ende, Wim

AU - Varrot, Annabelle

AU - Verluys, Maxime

AU - Vincent, Florence

AU - Vocadlo, David

AU - Wakarchuk, Warren

AU - Wennekes, Tom

AU - Williams, Rohan

AU - Williams, Spencer

AU - Wilkens, Casper

AU - Wilson, David

AU - Withers, Stephen

AU - Yaoi, Katsuro

AU - Yip, Vivian

AU - Zhang, Ran

PY - 2018

Y1 - 2018

N2 - CAZypedia was initiated in 2007 to create a comprehensive, living encyclopedia of the carbohydrate-active enzymes (CAZymes) and associated carbohydrate-binding modules involved in the synthesis, modification and degradation of complex carbohydrates. CAZypedia is closely connected with the actively curated CAZy database, which provides a sequence-based foundation for the biochemical, mechanistic and structural characterization of these diverse proteins. Now celebrating its 10th anniversary online, CAZypedia is a successful example of dynamic, community-driven and expert-based biocuration.

AB - CAZypedia was initiated in 2007 to create a comprehensive, living encyclopedia of the carbohydrate-active enzymes (CAZymes) and associated carbohydrate-binding modules involved in the synthesis, modification and degradation of complex carbohydrates. CAZypedia is closely connected with the actively curated CAZy database, which provides a sequence-based foundation for the biochemical, mechanistic and structural characterization of these diverse proteins. Now celebrating its 10th anniversary online, CAZypedia is a successful example of dynamic, community-driven and expert-based biocuration.

KW - Biocuration

KW - Bioinformatics

KW - Carbohydrate-active enzymes

KW - Glycoscience

KW - Glycobiology

U2 - 10.1093/glycob/cwx089

DO - 10.1093/glycob/cwx089

M3 - Journal article

C2 - 29040563

SN - 0959-6658

VL - 28

SP - 3

EP - 8

JO - Glycobiology

JF - Glycobiology

IS - 1

ER -

Ten years of CAZypedia: a living encyclopedia of carbohydrate-active enzymes

Abstract

Keywords

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