Structure, computational and biochemical analysis of PcCel45A endoglucanase from Phanerochaete chrysosporium and catalytic mechanisms of GH45 subfamily C members

Research output: Contribution to journalJournal article – Annual report year: 2018Researchpeer-review

Documents

DOI

  • Author: Godoy, Andre S.

    University of São Paulo, Brazil

  • Author: Pereira, Caroline S.

    University of Campinas, Brazil

  • Author: Ramia, Marina Paglione

    University of São Paulo, Brazil

  • Author: Silveira, Rodrigo L.

    University of Campinas, Brazil

  • Author: Camilo, Cesar M.

    Centro de Tecnologia Canavieira, Brazil

  • Author: Kadowaki, Marco A.

    University of São Paulo, Brazil

  • Author: Lange, Lene

    Center for BioProcess Engineering, Department of Chemical and Biochemical Engineering, Technical University of Denmark, Søltofts Plads, 2800, Kgs. Lyngby, Denmark

  • Author:

  • Author: Nascimento, Alessandro S.

    University of São Paulo, Brazil

  • Author: Skaf, Munir S.

    University of Campinas, Brazil

  • Author: Polikarpov, Igor

    University of São Paulo, Brazil

View graph of relations

The glycoside hydrolase family 45 (GH45) of carbohydrate modifying enzymes is mostly comprised of ß-1,4-endoglucanases. Significant diversity between the GH45 members has prompted the division of this family into three subfamilies: A, B and C, which may differ in terms of the mechanism, general architecture, substrate binding and cleavage. Here, we use a combination of X-ray crystallography, bioinformatics, enzymatic assays, molecular dynamics simulations and site-directed mutagenesis experiments to characterize the structure, substrate binding and enzymatic specificity of the GH45 subfamily C endoglucanase from Phanerochaete chrysosporium (PcCel45A). We investigated the role played by different residues in the binding of the enzyme to cellulose oligomers of different lengths and examined the structural characteristics and dynamics of PcCel45A that make subfamily C so dissimilar to other members of the GH45 family. Due to the structural similarity shared between PcCel45A and domain I of expansins, comparative analysis of their substrate binding was also carried out. Our bioinformatics sequence analyses revealed that the hydrolysis mechanisms in GH45 subfamily C is not restricted to use of the imidic asparagine as a general base in the "Newton's cradle" catalytic mechanism recently proposed for this subfamily.
Original languageEnglish
Article number3678
JournalScientific Reports
Volume8
Number of pages14
ISSN2045-2322
DOIs
Publication statusPublished - 2018
CitationsWeb of Science® Times Cited: No match on DOI
Download as:
Download as PDF
Select render style:
APAAuthorCBE/CSEHarvardMLAStandardVancouverShortLong
PDF
Download as HTML
Select render style:
APAAuthorCBE/CSEHarvardMLAStandardVancouverShortLong
HTML
Download as Word
Select render style:
APAAuthorCBE/CSEHarvardMLAStandardVancouverShortLong
Word

Download statistics

No data available

ID: 145370156