Spatiotemporal SNP analysis reveals pronounced biocomplexity at the northern range margin of Atlantic cod Gadus morhua

Nina Overgaard Therkildsen, Jakob Hemmer Hansen, R.B. Hedeholm, Mary Wisz, C. Pampoulie, Dorte Meldrup, Sara Bonanomi, A. Retzel, S.M. Olsen, Einar Eg Nielsen

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Abstract

Accurate prediction of species distribution shifts in the face of climate change requires a sound understanding of population diversity and local adaptations. Previous modeling has suggested that global warming will lead to increased abundance of Atlantic cod (Gadus morhua) in the ocean around Greenland, but the dynamics of earlier abundance fluctuations are not well understood. We applied a retrospective spatiotemporal population genomics approach to examine the temporal stability of cod population structure in this region and to search for signatures of divergent selection over a 78-year period spanning major demographic changes. Analyzing >900 gene-associated single nucleotide polymorphisms in 847 individuals, we identified four genetically distinct groups that exhibited varying spatial distributions with considerable overlap and mixture. The genetic composition had remained stable over decades at some spawning grounds, whereas complete population replacement was evident at others. Observations of elevated differentiation in certain genomic regions are consistent with adaptive divergence between the groups, indicating that they may respond differently to environmental variation. Significantly increased temporal changes at a subset of loci also suggest that adaptation may be ongoing. These findings illustrate the power of spatiotemporal population genomics for revealing biocomplexity in both space and time and for informing future fisheries management and conservation efforts
Original languageEnglish
JournalEvolutionary Applications (Online)
Volume6
Issue number4
Pages (from-to)690-705
ISSN1752-4563
DOIs
Publication statusPublished - 2013

Bibliographical note

© 2013 The Authors. Evolutionary Applications published by Blackwell Publishing Ltd. This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

Cite this

Therkildsen, Nina Overgaard ; Hansen, Jakob Hemmer ; Hedeholm, R.B. ; Wisz, Mary ; Pampoulie, C. ; Meldrup, Dorte ; Bonanomi, Sara ; Retzel, A. ; Olsen, S.M. ; Eg Nielsen, Einar. / Spatiotemporal SNP analysis reveals pronounced biocomplexity at the northern range margin of Atlantic cod Gadus morhua. In: Evolutionary Applications (Online). 2013 ; Vol. 6, No. 4. pp. 690-705.
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abstract = "Accurate prediction of species distribution shifts in the face of climate change requires a sound understanding of population diversity and local adaptations. Previous modeling has suggested that global warming will lead to increased abundance of Atlantic cod (Gadus morhua) in the ocean around Greenland, but the dynamics of earlier abundance fluctuations are not well understood. We applied a retrospective spatiotemporal population genomics approach to examine the temporal stability of cod population structure in this region and to search for signatures of divergent selection over a 78-year period spanning major demographic changes. Analyzing >900 gene-associated single nucleotide polymorphisms in 847 individuals, we identified four genetically distinct groups that exhibited varying spatial distributions with considerable overlap and mixture. The genetic composition had remained stable over decades at some spawning grounds, whereas complete population replacement was evident at others. Observations of elevated differentiation in certain genomic regions are consistent with adaptive divergence between the groups, indicating that they may respond differently to environmental variation. Significantly increased temporal changes at a subset of loci also suggest that adaptation may be ongoing. These findings illustrate the power of spatiotemporal population genomics for revealing biocomplexity in both space and time and for informing future fisheries management and conservation efforts",
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Spatiotemporal SNP analysis reveals pronounced biocomplexity at the northern range margin of Atlantic cod Gadus morhua. / Therkildsen, Nina Overgaard; Hansen, Jakob Hemmer; Hedeholm, R.B.; Wisz, Mary; Pampoulie, C.; Meldrup, Dorte; Bonanomi, Sara; Retzel, A.; Olsen, S.M.; Eg Nielsen, Einar.

In: Evolutionary Applications (Online), Vol. 6, No. 4, 2013, p. 690-705.

Research output: Contribution to journalJournal articleResearchpeer-review

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AU - Therkildsen, Nina Overgaard

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AU - Bonanomi, Sara

AU - Retzel, A.

AU - Olsen, S.M.

AU - Eg Nielsen, Einar

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AB - Accurate prediction of species distribution shifts in the face of climate change requires a sound understanding of population diversity and local adaptations. Previous modeling has suggested that global warming will lead to increased abundance of Atlantic cod (Gadus morhua) in the ocean around Greenland, but the dynamics of earlier abundance fluctuations are not well understood. We applied a retrospective spatiotemporal population genomics approach to examine the temporal stability of cod population structure in this region and to search for signatures of divergent selection over a 78-year period spanning major demographic changes. Analyzing >900 gene-associated single nucleotide polymorphisms in 847 individuals, we identified four genetically distinct groups that exhibited varying spatial distributions with considerable overlap and mixture. The genetic composition had remained stable over decades at some spawning grounds, whereas complete population replacement was evident at others. Observations of elevated differentiation in certain genomic regions are consistent with adaptive divergence between the groups, indicating that they may respond differently to environmental variation. Significantly increased temporal changes at a subset of loci also suggest that adaptation may be ongoing. These findings illustrate the power of spatiotemporal population genomics for revealing biocomplexity in both space and time and for informing future fisheries management and conservation efforts

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