Robust estimation of bacterial cell count from optical density

  • Interlab Study Contributors iGEM
  • , Jacob Beal
  • , Natalie G. Farny
  • , Traci Haddock-Angelli
  • , Vinoo Selvarajah
  • , Geoff S. Baldwin
  • , Russell Buckley-Taylor
  • , Markus Gershater
  • , Daisuke Kiga
  • , John Marken
  • , Vishal Sanchania
  • , Abigail Sison
  • , Christopher T. Workman*
  • *Corresponding author for this work

Research output: Contribution to journalJournal articleResearchpeer-review

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Abstract

Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals  
Original languageEnglish
Article number512
JournalCommunications Biology
Volume3
Issue number1
Number of pages29
ISSN2399-3642
DOIs
Publication statusPublished - 2020

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