Publisher Correction: Clonal analysis of Salmonella-specific effector T cells reveals serovar-specific and cross-reactive T cell responses

Giorgio Napolitani*, Karen Wei Weng Teng, Malick M. Gibani, Prathiba Kurupati, Margarida Rei, Anna Aulicino, Lorena Preciado-Llanes, Michael Thomas Wong, Etienne Becht, Lauren Howson, Paola de Haas, Mariolina Salio, Christoph J. Blohmke, Lars Rønn Olsen, David Miguel Susano Pinto, Laura Scifo, Claire Jones, Hazel Dobinson, Danielle Campbell, Helene B. Juel & 10 others Helena Thomaides-Brears, Derek Pickard, Dirk Bumann, Stephen Baker, Gordon Dougan, Alison Simmons, Melita A. Gordon, Evan William Newell, Andrew J. Pollard, Vincenzo Cerundolo

*Corresponding author for this work

Research output: Contribution to journalJournal articleCommunication

Abstract

In the version of this article initially published, the first affiliation lacked 'MRC'; the correct name of the institution is 'MRC Weatherall Institute of Molecular Medicine'. Two designations (SP110Y and ST110H) were incorrect in the legend to Fig. 6f,h,i. The correct text is as follows: for panel f, "...loaded with either the CdtB(105-125)SP110Y (DRB4*SP110Y) or the CdtB(105-125)ST110H (DRB4*ST110H) peptide variants..."; for panel h, "...decorated by the DRB4*SP110Y tetramer (lower-right quadrant), the DRB4*ST110H (upper-left quadrant)..."; and for panel i, "...stained ex vivo with DRB4*SP110Y, DRB4*ST110H...". In Fig. 8e, the final six residues (LTEAFF) of the sequence in the far right column of the third row of the table were missing; the correct sequence is 'CASSYRRTPPLTEAFF'. In the legend to Fig. 8d, a designation (HLyE) was incorrect; the correct text is as follows: "(HlyE?)." Portions of the Acknowledgements section were incorrect; the correct text is as follows: "This work was supported by the UK Medical Research Council (MRC) (MR/K021222/1) (G.N., M.A.G., A.S., V.C., A.J.P.),...the Oxford Biomedical Research Centre (A.J.P., V.C.),...and core funding from the Singapore Immunology Network (SIgN) (E.W.N.) and the SIgN immunomonitoring platform (E.W.N.)." Finally, a parenthetical element was phrased incorrectly in the final paragraph of the Methods subsection "T cell cloning and live fluorescence barcoding"; the correct phrasing is as follows: "...(which in all cases included HlyE, CdtB, Ty21a, Quailes, NVGH308, and LT2 strains and in volunteers T5 and T6 included PhoN)...". Also, in Figs. 3c and 4a, the right outlines of the plots were not visible; in the legend to Fig. 3, panel letter 'f' was not bold; and in Fig. 8f, 'ND' should be aligned directly beneath DRB4 in the key and 'ND' should be removed from the diagram at right, and the legend should be revised accordingly as follows: "...colors indicate the HLA class II restriction (gray indicates clones for which restriction was not determined (ND)). Clonotypes are grouped on the basis of pathogen selectivity (continuous line), protein specificity (dashed line) and epitope specificity; for ten HlyE-specific clones (pixilated squares), the epitope specificity was not determined...". The errors have been corrected in the HTML and PDF versions of the article.
Original languageEnglish
JournalNature Immunology
Volume20
Number of pages1
ISSN1529-2908
DOIs
Publication statusPublished - 2019

Cite this

Napolitani, Giorgio ; Teng, Karen Wei Weng ; Gibani, Malick M. ; Kurupati, Prathiba ; Rei, Margarida ; Aulicino, Anna ; Preciado-Llanes, Lorena ; Wong, Michael Thomas ; Becht, Etienne ; Howson, Lauren ; de Haas, Paola ; Salio, Mariolina ; Blohmke, Christoph J. ; Olsen, Lars Rønn ; Pinto, David Miguel Susano ; Scifo, Laura ; Jones, Claire ; Dobinson, Hazel ; Campbell, Danielle ; Juel, Helene B. ; Thomaides-Brears, Helena ; Pickard, Derek ; Bumann, Dirk ; Baker, Stephen ; Dougan, Gordon ; Simmons, Alison ; Gordon, Melita A. ; Newell, Evan William ; Pollard, Andrew J. ; Cerundolo, Vincenzo. / Publisher Correction: Clonal analysis of Salmonella-specific effector T cells reveals serovar-specific and cross-reactive T cell responses. In: Nature Immunology. 2019 ; Vol. 20.
@article{65cd2df4f9014ccc94b62dd81fc07516,
title = "Publisher Correction: Clonal analysis of Salmonella-specific effector T cells reveals serovar-specific and cross-reactive T cell responses",
abstract = "In the version of this article initially published, the first affiliation lacked 'MRC'; the correct name of the institution is 'MRC Weatherall Institute of Molecular Medicine'. Two designations (SP110Y and ST110H) were incorrect in the legend to Fig. 6f,h,i. The correct text is as follows: for panel f, {"}...loaded with either the CdtB(105-125)SP110Y (DRB4*SP110Y) or the CdtB(105-125)ST110H (DRB4*ST110H) peptide variants...{"}; for panel h, {"}...decorated by the DRB4*SP110Y tetramer (lower-right quadrant), the DRB4*ST110H (upper-left quadrant)...{"}; and for panel i, {"}...stained ex vivo with DRB4*SP110Y, DRB4*ST110H...{"}. In Fig. 8e, the final six residues (LTEAFF) of the sequence in the far right column of the third row of the table were missing; the correct sequence is 'CASSYRRTPPLTEAFF'. In the legend to Fig. 8d, a designation (HLyE) was incorrect; the correct text is as follows: {"}(HlyE?).{"} Portions of the Acknowledgements section were incorrect; the correct text is as follows: {"}This work was supported by the UK Medical Research Council (MRC) (MR/K021222/1) (G.N., M.A.G., A.S., V.C., A.J.P.),...the Oxford Biomedical Research Centre (A.J.P., V.C.),...and core funding from the Singapore Immunology Network (SIgN) (E.W.N.) and the SIgN immunomonitoring platform (E.W.N.).{"} Finally, a parenthetical element was phrased incorrectly in the final paragraph of the Methods subsection {"}T cell cloning and live fluorescence barcoding{"}; the correct phrasing is as follows: {"}...(which in all cases included HlyE, CdtB, Ty21a, Quailes, NVGH308, and LT2 strains and in volunteers T5 and T6 included PhoN)...{"}. Also, in Figs. 3c and 4a, the right outlines of the plots were not visible; in the legend to Fig. 3, panel letter 'f' was not bold; and in Fig. 8f, 'ND' should be aligned directly beneath DRB4 in the key and 'ND' should be removed from the diagram at right, and the legend should be revised accordingly as follows: {"}...colors indicate the HLA class II restriction (gray indicates clones for which restriction was not determined (ND)). Clonotypes are grouped on the basis of pathogen selectivity (continuous line), protein specificity (dashed line) and epitope specificity; for ten HlyE-specific clones (pixilated squares), the epitope specificity was not determined...{"}. The errors have been corrected in the HTML and PDF versions of the article.",
author = "Giorgio Napolitani and Teng, {Karen Wei Weng} and Gibani, {Malick M.} and Prathiba Kurupati and Margarida Rei and Anna Aulicino and Lorena Preciado-Llanes and Wong, {Michael Thomas} and Etienne Becht and Lauren Howson and {de Haas}, Paola and Mariolina Salio and Blohmke, {Christoph J.} and Olsen, {Lars R{\o}nn} and Pinto, {David Miguel Susano} and Laura Scifo and Claire Jones and Hazel Dobinson and Danielle Campbell and Juel, {Helene B.} and Helena Thomaides-Brears and Derek Pickard and Dirk Bumann and Stephen Baker and Gordon Dougan and Alison Simmons and Gordon, {Melita A.} and Newell, {Evan William} and Pollard, {Andrew J.} and Vincenzo Cerundolo",
year = "2019",
doi = "10.1038/s41590-019-0357-6",
language = "English",
volume = "20",
journal = "Nature Immunology",
issn = "1529-2908",
publisher = "Nature Publishing Group",

}

Napolitani, G, Teng, KWW, Gibani, MM, Kurupati, P, Rei, M, Aulicino, A, Preciado-Llanes, L, Wong, MT, Becht, E, Howson, L, de Haas, P, Salio, M, Blohmke, CJ, Olsen, LR, Pinto, DMS, Scifo, L, Jones, C, Dobinson, H, Campbell, D, Juel, HB, Thomaides-Brears, H, Pickard, D, Bumann, D, Baker, S, Dougan, G, Simmons, A, Gordon, MA, Newell, EW, Pollard, AJ & Cerundolo, V 2019, 'Publisher Correction: Clonal analysis of Salmonella-specific effector T cells reveals serovar-specific and cross-reactive T cell responses', Nature Immunology, vol. 20. https://doi.org/10.1038/s41590-019-0357-6

Publisher Correction: Clonal analysis of Salmonella-specific effector T cells reveals serovar-specific and cross-reactive T cell responses. / Napolitani, Giorgio; Teng, Karen Wei Weng; Gibani, Malick M.; Kurupati, Prathiba; Rei, Margarida; Aulicino, Anna; Preciado-Llanes, Lorena; Wong, Michael Thomas; Becht, Etienne; Howson, Lauren; de Haas, Paola; Salio, Mariolina; Blohmke, Christoph J.; Olsen, Lars Rønn; Pinto, David Miguel Susano; Scifo, Laura; Jones, Claire; Dobinson, Hazel; Campbell, Danielle; Juel, Helene B.; Thomaides-Brears, Helena; Pickard, Derek; Bumann, Dirk; Baker, Stephen; Dougan, Gordon; Simmons, Alison; Gordon, Melita A.; Newell, Evan William; Pollard, Andrew J.; Cerundolo, Vincenzo.

In: Nature Immunology, Vol. 20, 2019.

Research output: Contribution to journalJournal articleCommunication

TY - JOUR

T1 - Publisher Correction: Clonal analysis of Salmonella-specific effector T cells reveals serovar-specific and cross-reactive T cell responses

AU - Napolitani, Giorgio

AU - Teng, Karen Wei Weng

AU - Gibani, Malick M.

AU - Kurupati, Prathiba

AU - Rei, Margarida

AU - Aulicino, Anna

AU - Preciado-Llanes, Lorena

AU - Wong, Michael Thomas

AU - Becht, Etienne

AU - Howson, Lauren

AU - de Haas, Paola

AU - Salio, Mariolina

AU - Blohmke, Christoph J.

AU - Olsen, Lars Rønn

AU - Pinto, David Miguel Susano

AU - Scifo, Laura

AU - Jones, Claire

AU - Dobinson, Hazel

AU - Campbell, Danielle

AU - Juel, Helene B.

AU - Thomaides-Brears, Helena

AU - Pickard, Derek

AU - Bumann, Dirk

AU - Baker, Stephen

AU - Dougan, Gordon

AU - Simmons, Alison

AU - Gordon, Melita A.

AU - Newell, Evan William

AU - Pollard, Andrew J.

AU - Cerundolo, Vincenzo

PY - 2019

Y1 - 2019

N2 - In the version of this article initially published, the first affiliation lacked 'MRC'; the correct name of the institution is 'MRC Weatherall Institute of Molecular Medicine'. Two designations (SP110Y and ST110H) were incorrect in the legend to Fig. 6f,h,i. The correct text is as follows: for panel f, "...loaded with either the CdtB(105-125)SP110Y (DRB4*SP110Y) or the CdtB(105-125)ST110H (DRB4*ST110H) peptide variants..."; for panel h, "...decorated by the DRB4*SP110Y tetramer (lower-right quadrant), the DRB4*ST110H (upper-left quadrant)..."; and for panel i, "...stained ex vivo with DRB4*SP110Y, DRB4*ST110H...". In Fig. 8e, the final six residues (LTEAFF) of the sequence in the far right column of the third row of the table were missing; the correct sequence is 'CASSYRRTPPLTEAFF'. In the legend to Fig. 8d, a designation (HLyE) was incorrect; the correct text is as follows: "(HlyE?)." Portions of the Acknowledgements section were incorrect; the correct text is as follows: "This work was supported by the UK Medical Research Council (MRC) (MR/K021222/1) (G.N., M.A.G., A.S., V.C., A.J.P.),...the Oxford Biomedical Research Centre (A.J.P., V.C.),...and core funding from the Singapore Immunology Network (SIgN) (E.W.N.) and the SIgN immunomonitoring platform (E.W.N.)." Finally, a parenthetical element was phrased incorrectly in the final paragraph of the Methods subsection "T cell cloning and live fluorescence barcoding"; the correct phrasing is as follows: "...(which in all cases included HlyE, CdtB, Ty21a, Quailes, NVGH308, and LT2 strains and in volunteers T5 and T6 included PhoN)...". Also, in Figs. 3c and 4a, the right outlines of the plots were not visible; in the legend to Fig. 3, panel letter 'f' was not bold; and in Fig. 8f, 'ND' should be aligned directly beneath DRB4 in the key and 'ND' should be removed from the diagram at right, and the legend should be revised accordingly as follows: "...colors indicate the HLA class II restriction (gray indicates clones for which restriction was not determined (ND)). Clonotypes are grouped on the basis of pathogen selectivity (continuous line), protein specificity (dashed line) and epitope specificity; for ten HlyE-specific clones (pixilated squares), the epitope specificity was not determined...". The errors have been corrected in the HTML and PDF versions of the article.

AB - In the version of this article initially published, the first affiliation lacked 'MRC'; the correct name of the institution is 'MRC Weatherall Institute of Molecular Medicine'. Two designations (SP110Y and ST110H) were incorrect in the legend to Fig. 6f,h,i. The correct text is as follows: for panel f, "...loaded with either the CdtB(105-125)SP110Y (DRB4*SP110Y) or the CdtB(105-125)ST110H (DRB4*ST110H) peptide variants..."; for panel h, "...decorated by the DRB4*SP110Y tetramer (lower-right quadrant), the DRB4*ST110H (upper-left quadrant)..."; and for panel i, "...stained ex vivo with DRB4*SP110Y, DRB4*ST110H...". In Fig. 8e, the final six residues (LTEAFF) of the sequence in the far right column of the third row of the table were missing; the correct sequence is 'CASSYRRTPPLTEAFF'. In the legend to Fig. 8d, a designation (HLyE) was incorrect; the correct text is as follows: "(HlyE?)." Portions of the Acknowledgements section were incorrect; the correct text is as follows: "This work was supported by the UK Medical Research Council (MRC) (MR/K021222/1) (G.N., M.A.G., A.S., V.C., A.J.P.),...the Oxford Biomedical Research Centre (A.J.P., V.C.),...and core funding from the Singapore Immunology Network (SIgN) (E.W.N.) and the SIgN immunomonitoring platform (E.W.N.)." Finally, a parenthetical element was phrased incorrectly in the final paragraph of the Methods subsection "T cell cloning and live fluorescence barcoding"; the correct phrasing is as follows: "...(which in all cases included HlyE, CdtB, Ty21a, Quailes, NVGH308, and LT2 strains and in volunteers T5 and T6 included PhoN)...". Also, in Figs. 3c and 4a, the right outlines of the plots were not visible; in the legend to Fig. 3, panel letter 'f' was not bold; and in Fig. 8f, 'ND' should be aligned directly beneath DRB4 in the key and 'ND' should be removed from the diagram at right, and the legend should be revised accordingly as follows: "...colors indicate the HLA class II restriction (gray indicates clones for which restriction was not determined (ND)). Clonotypes are grouped on the basis of pathogen selectivity (continuous line), protein specificity (dashed line) and epitope specificity; for ten HlyE-specific clones (pixilated squares), the epitope specificity was not determined...". The errors have been corrected in the HTML and PDF versions of the article.

U2 - 10.1038/s41590-019-0357-6

DO - 10.1038/s41590-019-0357-6

M3 - Journal article

VL - 20

JO - Nature Immunology

JF - Nature Immunology

SN - 1529-2908

ER -