PCR-Based Seamless Genome Editing with High Efficiency and Fidelity in Escherichia coli

Yilan Liu, Maohua Yang, Daojiang Yan, Wanwan Cheng, Anders Thygesen, Ruonan Chen, Jianmin Xing, Qinhong Wang, Yanhe Ma, Mark Isalan (Editor)

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Abstract

Efficiency and fidelity are the key obstacles for genome editing toolboxes. In the present study, a PCR-based tandem repeat assisted genome editing (TRAGE) method with high efficiency and fidelity was developed. The design of TRAGE is based on the mechanism of repair of spontaneous double-strand breakage (DSB) via replication fork reactivation. First, cat-sacB cassette flanked by tandem repeat sequence was integrated into target site in chromosome assisted by Red enzymes. Then, for the excision of the cat-sacB cassette, only subculturing is needed. The developed method was successfully applied for seamlessly deleting, substituting and inserting targeted genes using PCR products. The effects of different manipulations including sucrose addition time, subculture times in LB with sucrose and stages of inoculation on the efficiency were investigated. With our recommended procedure, seamless excision of cat-sacB cassette can be realized in 48 h efficiently. We believe that the developed method has great potential for seamless genome editing in E. coli.
Original languageEnglish
JournalP L o S One
Volume11
Issue number3
Pages (from-to)e0149762
ISSN1932-6203
DOIs
Publication statusPublished - 2016

Bibliographical note

Copyright: © 2016 Liu et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Cite this

Liu, Y., Yang, M., Yan, D., Cheng, W., Thygesen, A., Chen, R., Xing, J., Wang, Q., Ma, Y., & Isalan, M. (Ed.) (2016). PCR-Based Seamless Genome Editing with High Efficiency and Fidelity in Escherichia coli. P L o S One, 11(3), e0149762. https://doi.org/10.1371/journal.pone.0149762