Patscanui: an intuitive web interface for searching patterns in DNA and protein data

Kai Blin, Wolfgang Wohlleben, Tilmann Weber*

*Corresponding author for this work

Research output: Contribution to journalJournal articleResearchpeer-review

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Abstract

Patterns in biological sequences frequently signify interesting features in the underlying molecule. Many tools exist to search for well-known patterns. Less support is available for exploratory analysis, where no well-defined patterns are known yet. PatScanUI (https://patscan.secondarymetabolites.org/) provides a highly interactive web interface to the powerful generic pattern search tool PatScan. The complex PatScan-patterns are created in a drag-and-drop aware interface allowing researchers to do rapid prototyping of the often complicated patterns useful to identifying features of interest.
Original languageEnglish
JournalNucleic acids research
Volume46
Issue numberW1
Pages (from-to)W205-W208
ISSN0305-1048
DOIs
Publication statusPublished - 2018

Bibliographical note

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

Cite this

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title = "Patscanui: an intuitive web interface for searching patterns in DNA and protein data",
abstract = "Patterns in biological sequences frequently signify interesting features in the underlying molecule. Many tools exist to search for well-known patterns. Less support is available for exploratory analysis, where no well-defined patterns are known yet. PatScanUI (https://patscan.secondarymetabolites.org/) provides a highly interactive web interface to the powerful generic pattern search tool PatScan. The complex PatScan-patterns are created in a drag-and-drop aware interface allowing researchers to do rapid prototyping of the often complicated patterns useful to identifying features of interest.",
author = "Kai Blin and Wolfgang Wohlleben and Tilmann Weber",
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Patscanui: an intuitive web interface for searching patterns in DNA and protein data. / Blin, Kai; Wohlleben, Wolfgang; Weber, Tilmann.

In: Nucleic acids research, Vol. 46, No. W1, 2018, p. W205-W208.

Research output: Contribution to journalJournal articleResearchpeer-review

TY - JOUR

T1 - Patscanui: an intuitive web interface for searching patterns in DNA and protein data

AU - Blin, Kai

AU - Wohlleben, Wolfgang

AU - Weber, Tilmann

N1 - This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

PY - 2018

Y1 - 2018

N2 - Patterns in biological sequences frequently signify interesting features in the underlying molecule. Many tools exist to search for well-known patterns. Less support is available for exploratory analysis, where no well-defined patterns are known yet. PatScanUI (https://patscan.secondarymetabolites.org/) provides a highly interactive web interface to the powerful generic pattern search tool PatScan. The complex PatScan-patterns are created in a drag-and-drop aware interface allowing researchers to do rapid prototyping of the often complicated patterns useful to identifying features of interest.

AB - Patterns in biological sequences frequently signify interesting features in the underlying molecule. Many tools exist to search for well-known patterns. Less support is available for exploratory analysis, where no well-defined patterns are known yet. PatScanUI (https://patscan.secondarymetabolites.org/) provides a highly interactive web interface to the powerful generic pattern search tool PatScan. The complex PatScan-patterns are created in a drag-and-drop aware interface allowing researchers to do rapid prototyping of the often complicated patterns useful to identifying features of interest.

U2 - 10.1093/nar/gky321

DO - 10.1093/nar/gky321

M3 - Journal article

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