TY - JOUR
T1 - PanViz: interactive visualization of the structure of functionally annotated pangenomes
AU - Pedersen, Thomas Lin
AU - Nookaew, Intawat
AU - Wayne Ussery, David
AU - Månsson, Maria
N1 - This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact [email protected]
PY - 2017
Y1 - 2017
N2 - PanViz is a novel, interactive, visualization tool for pangenome analysis. PanViz allows visualization of changes in gene group (groups of similar genes across genomes) classification as different subsets of pangenomes are selected, as well as comparisons of individual genomes to pangenomes with gene ontology based navigation of gene groups. Furthermore it allows for rich and complex visual querying of gene groups in the pangenome. PanViz visualizations require no external programs and are easily sharable, allowing for rapid pangenome analyses. PanViz is written entirely in JavaScript and is available on https://github.com/thomasp85/PanViz A companion R package that facilitates the creation of PanViz visualizations from a range of data formats is released through Bioconductor and is available at https://bioconductor.org/packages/PanVizGenerator CONTACT: [email protected] information: Supplementary data are available at Bioinformatics online.
AB - PanViz is a novel, interactive, visualization tool for pangenome analysis. PanViz allows visualization of changes in gene group (groups of similar genes across genomes) classification as different subsets of pangenomes are selected, as well as comparisons of individual genomes to pangenomes with gene ontology based navigation of gene groups. Furthermore it allows for rich and complex visual querying of gene groups in the pangenome. PanViz visualizations require no external programs and are easily sharable, allowing for rapid pangenome analyses. PanViz is written entirely in JavaScript and is available on https://github.com/thomasp85/PanViz A companion R package that facilitates the creation of PanViz visualizations from a range of data formats is released through Bioconductor and is available at https://bioconductor.org/packages/PanVizGenerator CONTACT: [email protected] information: Supplementary data are available at Bioinformatics online.
U2 - 10.1093/bioinformatics/btw761
DO - 10.1093/bioinformatics/btw761
M3 - Journal article
C2 - 28057677
SN - 1367-4803
VL - 33
SP - 1081
EP - 1082
JO - Bioinformatics
JF - Bioinformatics
IS - 7
M1 - btw761
ER -