PanViz: interactive visualization of the structure of functionally annotated pangenomes

Thomas Lin Pedersen, Intawat Nookaew, David Wayne Ussery, Maria Månsson

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    Abstract

    PanViz is a novel, interactive, visualization tool for pangenome analysis. PanViz allows visualization of changes in gene group (groups of similar genes across genomes) classification as different subsets of pangenomes are selected, as well as comparisons of individual genomes to pangenomes with gene ontology based navigation of gene groups. Furthermore it allows for rich and complex visual querying of gene groups in the pangenome. PanViz visualizations require no external programs and are easily sharable, allowing for rapid pangenome analyses. PanViz is written entirely in JavaScript and is available on https://github.com/thomasp85/PanViz A companion R package that facilitates the creation of PanViz visualizations from a range of data formats is released through Bioconductor and is available at https://bioconductor.org/packages/PanVizGenerator CONTACT: thomasp85@gmail.comSupplementary information: Supplementary data are available at Bioinformatics online.
    Original languageEnglish
    Article numberbtw761
    JournalBioinformatics
    Volume33
    Issue number7
    Pages (from-to)1081-1082
    Number of pages2
    ISSN1367-4803
    DOIs
    Publication statusPublished - 2017

    Bibliographical note

    This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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