OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data

Julianus Pfeuffer; Chris Bielow; Samuel Wein; Kyowon Jeong; Eugen Netz; Axel Walter; Oliver Alka; Lars Nilse; Pasquale Domenico Colaianni; Douglas McCloskey; Jihyung Kim; George Rosenberger; Leon Bichmann; Mathias Walzer; Johannes Veit; Bertrand Boudaud; Matthias Bernt; Nikolaos Patikas; Matteo Pilz; Michał Piotr Startek; Svetlana Kutuzova; Lukas Heumos; Joshua Charkow; Justin Cyril Sing; Ayesha Feroz; Arslan Siraj; Hendrik Weisser; Tjeerd M.H. Dijkstra; Yasset Perez-Riverol; Hannes Röst; Oliver Kohlbacher; Timo Sachsenberg

doi:10.1038/s41592-024-02197-7

OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data

Julianus Pfeuffer
, Chris Bielow
, Samuel Wein
, Kyowon Jeong
, Eugen Netz
, Axel Walter
, Oliver Alka
, Lars Nilse
, Pasquale Domenico Colaianni
, Douglas McCloskey
, Jihyung Kim
, George Rosenberger
, Leon Bichmann
, Mathias Walzer
, Johannes Veit
, Bertrand Boudaud
, Matthias Bernt
, Nikolaos Patikas
, Matteo Pilz
, Michał Piotr Startek

Svetlana Kutuzova, Lukas Heumos, Joshua Charkow, Justin Cyril Sing, Ayesha Feroz, Arslan Siraj, Hendrik Weisser, Tjeerd M.H. Dijkstra, Yasset Perez-Riverol, Hannes Röst, Oliver Kohlbacher, Timo Sachsenberg^*

^*Corresponding author for this work

Research output: Contribution to journal › Letter › peer-review

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Original language	English
Journal	Nature Methods
Volume	21
Issue number	3
Pages (from-to)	365-367
ISSN	1548-7091
DOIs	https://doi.org/10.1038/s41592-024-02197-7
Publication status	Published - 2024

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Pfeuffer, J., Bielow, C., Wein, S., Jeong, K., Netz, E., Walter, A., Alka, O., Nilse, L., Colaianni, P. D., McCloskey, D., Kim, J., Rosenberger, G., Bichmann, L., Walzer, M., Veit, J., Boudaud, B., Bernt, M., Patikas, N., Pilz, M., ... Sachsenberg, T. (2024). OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data. Nature Methods, 21(3), 365-367. https://doi.org/10.1038/s41592-024-02197-7

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title = "OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data",

author = "Julianus Pfeuffer and Chris Bielow and Samuel Wein and Kyowon Jeong and Eugen Netz and Axel Walter and Oliver Alka and Lars Nilse and Colaianni, \{Pasquale Domenico\} and Douglas McCloskey and Jihyung Kim and George Rosenberger and Leon Bichmann and Mathias Walzer and Johannes Veit and Bertrand Boudaud and Matthias Bernt and Nikolaos Patikas and Matteo Pilz and Startek, \{Micha{\l} Piotr\} and Svetlana Kutuzova and Lukas Heumos and Joshua Charkow and Sing, \{Justin Cyril\} and Ayesha Feroz and Arslan Siraj and Hendrik Weisser and Dijkstra, \{Tjeerd M.H.\} and Yasset Perez-Riverol and Hannes R{\"o}st and Oliver Kohlbacher and Timo Sachsenberg",

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doi = "10.1038/s41592-024-02197-7",

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journal = "Nature Methods",

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Pfeuffer, J, Bielow, C, Wein, S, Jeong, K, Netz, E, Walter, A, Alka, O, Nilse, L, Colaianni, PD, McCloskey, D, Kim, J, Rosenberger, G, Bichmann, L, Walzer, M, Veit, J, Boudaud, B, Bernt, M, Patikas, N, Pilz, M, Startek, MP, Kutuzova, S, Heumos, L, Charkow, J, Sing, JC, Feroz, A, Siraj, A, Weisser, H, Dijkstra, TMH, Perez-Riverol, Y, Röst, H, Kohlbacher, O & Sachsenberg, T 2024, 'OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data', Nature Methods, vol. 21, no. 3, pp. 365-367. https://doi.org/10.1038/s41592-024-02197-7

TY - JOUR

T1 - OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data

AU - Pfeuffer, Julianus

AU - Bielow, Chris

AU - Wein, Samuel

AU - Jeong, Kyowon

AU - Netz, Eugen

AU - Walter, Axel

AU - Alka, Oliver

AU - Nilse, Lars

AU - Colaianni, Pasquale Domenico

AU - McCloskey, Douglas

AU - Kim, Jihyung

AU - Rosenberger, George

AU - Bichmann, Leon

AU - Walzer, Mathias

AU - Veit, Johannes

AU - Boudaud, Bertrand

AU - Bernt, Matthias

AU - Patikas, Nikolaos

AU - Pilz, Matteo

AU - Startek, Michał Piotr

AU - Kutuzova, Svetlana

AU - Heumos, Lukas

AU - Charkow, Joshua

AU - Sing, Justin Cyril

AU - Feroz, Ayesha

AU - Siraj, Arslan

AU - Weisser, Hendrik

AU - Dijkstra, Tjeerd M.H.

AU - Perez-Riverol, Yasset

AU - Röst, Hannes

AU - Kohlbacher, Oliver

AU - Sachsenberg, Timo

PY - 2024

Y1 - 2024

U2 - 10.1038/s41592-024-02197-7

DO - 10.1038/s41592-024-02197-7

M3 - Letter

C2 - 38366242

AN - SCOPUS:85185108195

SN - 1548-7091

VL - 21

SP - 365

EP - 367

JO - Nature Methods

JF - Nature Methods

IS - 3

ER -