O-GLYCOBASE version 4.0: a revised database of O-glycosylated proteins.

Ramneek Gupta, Hanne Birch, Krzysztof Rapacki, Søren Brunak, Jan Erik Hansen

    Research output: Contribution to journalJournal articleResearchpeer-review

    Abstract

    O-GLYCBASE is a database of glycoproteins with O-linked glycosylation sites. Entries with at least one experimentally verified O-glycosylation site have been complied from protein sequence databases and literature. Each entry contains information about the glycan involved, the species, sequence, a literature reference and http-linked cross-references to other databases. Version 4.0 contains 179 protein entries, an approximate 15% increase over the last version. Sequence logos representing the acceptor specificity patterns for GalNAc, GlcNAc, mannosyl and xylosyl transferases are shown. The O-GLYCBASE database is available through the WWW at http://www.cbs.dtu.dk/databases/OGLYCBASE/.
    Original languageEnglish
    JournalNucleic Acids Research
    Volume27
    Issue number1
    Pages (from-to)370-372
    ISSN0305-1048
    DOIs
    Publication statusPublished - 1999

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