Abstract
O-GLYCBASE is an updated database of information on glycoproteins
and their O-linked glycosylation sites. Entries are compiled and
revised from the literature, and from the SWISS-PROT database.
Entries include information about species, sequence, glycosylation
sites and glycan type. O-GLYCBASE is now fully cross-referenced to
the SWISS-PROT, PIR, PROSITE, PDB, EMBL, HSSP, LISTA and MIM
databases. Compared with version 1.0 the number of entries have
increased by 34%. Revision of the O-glycan assignment was
performed on 20% of the entries. Sequence logos displaying the
acceptor specificity patterns for the GalNAc, mannose and GlcNAc
transferases are shown. The O-GLYCBASE database is available
through WWW or by anonymous FTP.
Original language | English |
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Journal | Nucleic Acids Research |
Volume | 25 |
Issue number | 1 |
Pages (from-to) | 278-282 |
ISSN | 0305-1048 |
Publication status | Published - 1997 |