O-GLYCBASE version 2.0: a revised database of O-glycosylated proteins

Jan Hansen, Ole Lund, Kristoffer Rapacki, Søren Brunak

    Research output: Contribution to journalJournal articleResearchpeer-review

    Abstract

    O-GLYCBASE is an updated database of information on glycoproteins and their O-linked glycosylation sites. Entries are compiled and revised from the literature, and from the SWISS-PROT database. Entries include information about species, sequence, glycosylation sites and glycan type. O-GLYCBASE is now fully cross-referenced to the SWISS-PROT, PIR, PROSITE, PDB, EMBL, HSSP, LISTA and MIM databases. Compared with version 1.0 the number of entries have increased by 34%. Revision of the O-glycan assignment was performed on 20% of the entries. Sequence logos displaying the acceptor specificity patterns for the GalNAc, mannose and GlcNAc transferases are shown. The O-GLYCBASE database is available through WWW or by anonymous FTP.
    Original languageEnglish
    JournalNucleic Acids Research
    Volume25
    Issue number1
    Pages (from-to)278-282
    ISSN0305-1048
    Publication statusPublished - 1997

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