Neural network predicts sequence of TP53 gene based on DNA chip

J.S. Spicker, F. Wikman, M.L. Lu, C. Cordon-Cardo, Christopher Workman, T.F. Ørntoft, Søren Brunak, Steen Knudsen

    Research output: Contribution to journalJournal articleResearchpeer-review

    Abstract

    We have trained an artificial neural network to predict the sequence of the human TP53 tumor suppressor gene based on a p53 GeneChip. The trained neural network uses as input the fluorescence intensities of DNA hybridized to oligonucleotides on the surface of the chip and makes between zero and four errors in the predicted 1300 bp sequence when tested on wild-type TP53 sequence.
    Original languageEnglish
    JournalBioinformatics
    Volume18
    Issue number8
    Pages (from-to)1133-1134
    ISSN1367-4803
    DOIs
    Publication statusPublished - 2002

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