MatrixPlot: visualizing sequence constraints.

Jan Gorodkin; Hans Henrik Stærfeldt; Ole Lund; Søren Brunak

MatrixPlot: visualizing sequence constraints.

Jan Gorodkin
, Hans Henrik Stærfeldt
, Ole Lund
, Søren Brunak

Danish Building Research Institute

Research output: Contribution to journal › Journal article › Research › peer-review

Abstract

MatrixPlot: visualizing sequence constraints. Sub-title Abstract Summary : MatrixPlot is a program for making high-quality matrix plots, such as mutual information plots of sequence alignments and distance matrices of sequences with known three-dimensional coordinates. The user can add information about the sequences (e.g. a sequence logo profile) along the edges of the plot, as well as zoom in on any region in the plot. Availability : MatrixPlot can be obtained on request, and can also be accessed online at http://www. cbs.dtu.dk/services/MatrixPlot. Contact : [email protected]

Original language	English
Journal	Bioinformatics
Volume	15
Issue number	9
Pages (from-to)	769-70
ISSN	1367-4803
Publication status	Published - 1999

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title = "MatrixPlot: visualizing sequence constraints.",

abstract = "MatrixPlot: visualizing sequence constraints. Sub-title Abstract Summary : MatrixPlot is a program for making high-quality matrix plots, such as mutual information plots of sequence alignments and distance matrices of sequences with known three-dimensional coordinates. The user can add information about the sequences (e.g. a sequence logo profile) along the edges of the plot, as well as zoom in on any region in the plot. Availability : MatrixPlot can be obtained on request, and can also be accessed online at http://www. cbs.dtu.dk/services/MatrixPlot. Contact : [email protected]",

author = "Jan Gorodkin and St{\ae}rfeldt, \{Hans Henrik\} and Ole Lund and S{\o}ren Brunak",

year = "1999",

language = "English",

volume = "15",

pages = "769--70",

journal = "Bioinformatics",

issn = "1367-4803",

publisher = "Oxford University Press",

number = "9",

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TY - JOUR

T1 - MatrixPlot: visualizing sequence constraints.

AU - Gorodkin, Jan

AU - Stærfeldt, Hans Henrik

AU - Lund, Ole

AU - Brunak, Søren

PY - 1999

Y1 - 1999

N2 - MatrixPlot: visualizing sequence constraints. Sub-title Abstract Summary : MatrixPlot is a program for making high-quality matrix plots, such as mutual information plots of sequence alignments and distance matrices of sequences with known three-dimensional coordinates. The user can add information about the sequences (e.g. a sequence logo profile) along the edges of the plot, as well as zoom in on any region in the plot. Availability : MatrixPlot can be obtained on request, and can also be accessed online at http://www. cbs.dtu.dk/services/MatrixPlot. Contact : [email protected]

AB - MatrixPlot: visualizing sequence constraints. Sub-title Abstract Summary : MatrixPlot is a program for making high-quality matrix plots, such as mutual information plots of sequence alignments and distance matrices of sequences with known three-dimensional coordinates. The user can add information about the sequences (e.g. a sequence logo profile) along the edges of the plot, as well as zoom in on any region in the plot. Availability : MatrixPlot can be obtained on request, and can also be accessed online at http://www. cbs.dtu.dk/services/MatrixPlot. Contact : [email protected]

M3 - Journal article

SN - 1367-4803

VL - 15

SP - 769

EP - 770

JO - Bioinformatics

JF - Bioinformatics

IS - 9

ER -

MatrixPlot: visualizing sequence constraints.

Abstract

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