Matching Two-dimensional Gel Electrophoresis' Spots

António Dos Anjos; Faroq AL-Tam; Hamid Reza Shahbazkia; Bjarne Kjær Ersbøll

Matching Two-dimensional Gel Electrophoresis' Spots

António Dos Anjos, Faroq AL-Tam, Hamid Reza Shahbazkia, Bjarne Kjær Ersbøll

Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

Abstract

This paper describes an approach for matching Two-Dimensional Electrophoresis (2-DE) gels' spots, involving the use of image registration. The number of false positive matches produced by the proposed approach is small, when compared to academic and commercial state-of-the-art approaches. This article contributes to solving one of the greatest bottlenecks in the 2-DE analysis pipeline.

Original language	English
Title of host publication	BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms
Publisher	SciTePress
Publication date	2012
Pages	111-117
ISBN (Print)	978-989-8425-90-4
Publication status	Published - 2012
Event	International Conference on Bioinformatics Models, Methods and Algorithms (BIOINFORMATICS 2012) - Vilamoura, Algarv, Portugal Duration: 1 Feb 2012 → 4 Feb 2012 http://www.bioinformatics.biostec.org/BIOINFORMATICS2012/

Conference

Conference	International Conference on Bioinformatics Models, Methods and Algorithms (BIOINFORMATICS 2012)
Country/Territory	Portugal
City	Vilamoura, Algarv
Period	01/02/2012 → 04/02/2012
Internet address	http://www.bioinformatics.biostec.org/BIOINFORMATICS2012/

Keywords

Algorithms
Electrophoresis
Mathematical models
Bioinformatics

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title = "Matching Two-dimensional Gel Electrophoresis' Spots",

abstract = "This paper describes an approach for matching Two-Dimensional Electrophoresis (2-DE) gels' spots, involving the use of image registration. The number of false positive matches produced by the proposed approach is small, when compared to academic and commercial state-of-the-art approaches. This article contributes to solving one of the greatest bottlenecks in the 2-DE analysis pipeline.",

keywords = "Algorithms, Electrophoresis, Mathematical models, Bioinformatics",

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year = "2012",

language = "English",

isbn = "978-989-8425-90-4",

pages = "111--117",

booktitle = "BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms",

publisher = "SciTePress",

note = "International Conference on Bioinformatics Models, Methods and Algorithms (BIOINFORMATICS 2012) ; Conference date: 01-02-2012 Through 04-02-2012",

url = "http://www.bioinformatics.biostec.org/BIOINFORMATICS2012/",

}

Dos Anjos, A, AL-Tam, F, Shahbazkia, HR & Ersbøll, BK 2012, Matching Two-dimensional Gel Electrophoresis' Spots. in BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms. SciTePress, pp. 111-117, International Conference on Bioinformatics Models, Methods and Algorithms (BIOINFORMATICS 2012), Vilamoura, Algarv, Portugal, 01/02/2012.

Matching Two-dimensional Gel Electrophoresis' Spots. / Dos Anjos, António; AL-Tam, Faroq; Shahbazkia, Hamid Reza et al.
BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms. SciTePress, 2012. p. 111-117.

Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

TY - GEN

T1 - Matching Two-dimensional Gel Electrophoresis' Spots

AU - Dos Anjos, António

AU - AL-Tam, Faroq

AU - Shahbazkia, Hamid Reza

AU - Ersbøll, Bjarne Kjær

PY - 2012

Y1 - 2012

N2 - This paper describes an approach for matching Two-Dimensional Electrophoresis (2-DE) gels' spots, involving the use of image registration. The number of false positive matches produced by the proposed approach is small, when compared to academic and commercial state-of-the-art approaches. This article contributes to solving one of the greatest bottlenecks in the 2-DE analysis pipeline.

AB - This paper describes an approach for matching Two-Dimensional Electrophoresis (2-DE) gels' spots, involving the use of image registration. The number of false positive matches produced by the proposed approach is small, when compared to academic and commercial state-of-the-art approaches. This article contributes to solving one of the greatest bottlenecks in the 2-DE analysis pipeline.

KW - Algorithms

KW - Electrophoresis

KW - Mathematical models

KW - Bioinformatics

M3 - Article in proceedings

SN - 978-989-8425-90-4

SP - 111

EP - 117

BT - BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms

PB - SciTePress

T2 - International Conference on Bioinformatics Models, Methods and Algorithms (BIOINFORMATICS 2012)

Y2 - 1 February 2012 through 4 February 2012

ER -

Matching Two-dimensional Gel Electrophoresis' Spots

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Conference

Keywords

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