JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update

J.C. Bryne, E. Valen, M.H.E. Tang, T. Marstrand, Ole Winther, I. da Piedade, A. Krogh, B. Lenhard, A. Sandelin

    Research output: Contribution to journalJournal articleResearchpeer-review

    Abstract

    JASPAR is a popular open-access database for matrix models describing DNA-binding preferences for transcription factors and other DNA patterns. With its third major release, JASPAR has been expanded and equipped with additional functions aimed at both casual and power users. The heart of the JASPAR databasethe JASPAR CORE sub-databasehas increased by 12 in size, and three new specialized sub-databases have been added. New functions include clustering of matrix models by similarity, generation of random matrices by sampling from selected sets of existing models and a language-independent Web Service applications programming interface for matrix retrieval. JASPAR is available at http://jaspar.genereg.net.
    Original languageEnglish
    JournalNucleic Acids Research
    Volume36
    Pages (from-to)D102-D106
    ISSN0305-1048
    DOIs
    Publication statusPublished - 2008

    Cite this

    Bryne, J.C. ; Valen, E. ; Tang, M.H.E. ; Marstrand, T. ; Winther, Ole ; da Piedade, I. ; Krogh, A. ; Lenhard, B. ; Sandelin, A. / JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update. In: Nucleic Acids Research. 2008 ; Vol. 36. pp. D102-D106.
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    title = "JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update",
    abstract = "JASPAR is a popular open-access database for matrix models describing DNA-binding preferences for transcription factors and other DNA patterns. With its third major release, JASPAR has been expanded and equipped with additional functions aimed at both casual and power users. The heart of the JASPAR databasethe JASPAR CORE sub-databasehas increased by 12 in size, and three new specialized sub-databases have been added. New functions include clustering of matrix models by similarity, generation of random matrices by sampling from selected sets of existing models and a language-independent Web Service applications programming interface for matrix retrieval. JASPAR is available at http://jaspar.genereg.net.",
    author = "J.C. Bryne and E. Valen and M.H.E. Tang and T. Marstrand and Ole Winther and {da Piedade}, I. and A. Krogh and B. Lenhard and A. Sandelin",
    year = "2008",
    doi = "10.1093/nar/gkm955",
    language = "English",
    volume = "36",
    pages = "D102--D106",
    journal = "Nucleic Acids Research",
    issn = "0305-1048",
    publisher = "Oxford University Press",

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    Bryne, JC, Valen, E, Tang, MHE, Marstrand, T, Winther, O, da Piedade, I, Krogh, A, Lenhard, B & Sandelin, A 2008, 'JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update', Nucleic Acids Research, vol. 36, pp. D102-D106. https://doi.org/10.1093/nar/gkm955

    JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update. / Bryne, J.C.; Valen, E.; Tang, M.H.E.; Marstrand, T.; Winther, Ole; da Piedade, I.; Krogh, A.; Lenhard, B.; Sandelin, A.

    In: Nucleic Acids Research, Vol. 36, 2008, p. D102-D106.

    Research output: Contribution to journalJournal articleResearchpeer-review

    TY - JOUR

    T1 - JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update

    AU - Bryne, J.C.

    AU - Valen, E.

    AU - Tang, M.H.E.

    AU - Marstrand, T.

    AU - Winther, Ole

    AU - da Piedade, I.

    AU - Krogh, A.

    AU - Lenhard, B.

    AU - Sandelin, A.

    PY - 2008

    Y1 - 2008

    N2 - JASPAR is a popular open-access database for matrix models describing DNA-binding preferences for transcription factors and other DNA patterns. With its third major release, JASPAR has been expanded and equipped with additional functions aimed at both casual and power users. The heart of the JASPAR databasethe JASPAR CORE sub-databasehas increased by 12 in size, and three new specialized sub-databases have been added. New functions include clustering of matrix models by similarity, generation of random matrices by sampling from selected sets of existing models and a language-independent Web Service applications programming interface for matrix retrieval. JASPAR is available at http://jaspar.genereg.net.

    AB - JASPAR is a popular open-access database for matrix models describing DNA-binding preferences for transcription factors and other DNA patterns. With its third major release, JASPAR has been expanded and equipped with additional functions aimed at both casual and power users. The heart of the JASPAR databasethe JASPAR CORE sub-databasehas increased by 12 in size, and three new specialized sub-databases have been added. New functions include clustering of matrix models by similarity, generation of random matrices by sampling from selected sets of existing models and a language-independent Web Service applications programming interface for matrix retrieval. JASPAR is available at http://jaspar.genereg.net.

    U2 - 10.1093/nar/gkm955

    DO - 10.1093/nar/gkm955

    M3 - Journal article

    VL - 36

    SP - D102-D106

    JO - Nucleic Acids Research

    JF - Nucleic Acids Research

    SN - 0305-1048

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