TY - JOUR
T1 - Expanding the genome information on Bacillales for biosynthetic gene cluster discovery
AU - Song, Lijie
AU - Nielsen, Lasse Johan Dyrbye
AU - Xu, Xinming
AU - Mohite, Omkar Satyavan
AU - Nuhamunada, Matin
AU - Xu, Zhihui
AU - Murphy, Rob
AU - Bodawatta, Kasun
AU - Poulsen, Michael
AU - Abdulla, Mohamed Hatha
AU - Sonnenschein, Eva C.
AU - Weber, Tilmann
AU - Kovács, Ákos T.
N1 - Publisher Copyright:
© The Author(s) 2024.
PY - 2024
Y1 - 2024
N2 - This study showcases 121 new genomes of spore-forming Bacillales from strains collected globally from a variety of habitats, assembled using Oxford Nanopore long-read and MGI short-read sequences. Bacilli are renowned for their capacity to produce diverse secondary metabolites with use in agriculture, biotechnology, and medicine. These secondary metabolites are encoded within biosynthetic gene clusters (smBGCs). smBGCs have significant research interest due to their potential as sources of new bioactivate compounds. Our dataset includes 62 complete genomes, 2 at chromosome level, and 57 at contig level, covering a genomic size range from 3.50 Mb to 7.15 Mb. Phylotaxonomic analysis revealed that these genomes span 16 genera, with 69 of them belonging to Bacillus. A total of 1,176 predicted BGCs were identified by in silico genome mining. We anticipate that the open-access data presented here will expand the reported genomic information of spore-forming Bacillales and facilitate a deeper understanding of the genetic basis of Bacillales’ potential for secondary metabolite production.
AB - This study showcases 121 new genomes of spore-forming Bacillales from strains collected globally from a variety of habitats, assembled using Oxford Nanopore long-read and MGI short-read sequences. Bacilli are renowned for their capacity to produce diverse secondary metabolites with use in agriculture, biotechnology, and medicine. These secondary metabolites are encoded within biosynthetic gene clusters (smBGCs). smBGCs have significant research interest due to their potential as sources of new bioactivate compounds. Our dataset includes 62 complete genomes, 2 at chromosome level, and 57 at contig level, covering a genomic size range from 3.50 Mb to 7.15 Mb. Phylotaxonomic analysis revealed that these genomes span 16 genera, with 69 of them belonging to Bacillus. A total of 1,176 predicted BGCs were identified by in silico genome mining. We anticipate that the open-access data presented here will expand the reported genomic information of spore-forming Bacillales and facilitate a deeper understanding of the genetic basis of Bacillales’ potential for secondary metabolite production.
U2 - 10.1038/s41597-024-04118-x
DO - 10.1038/s41597-024-04118-x
M3 - Journal article
C2 - 39572589
AN - SCOPUS:85209736573
SN - 2052-4463
VL - 11
JO - Scientific Data
JF - Scientific Data
IS - 1
M1 - 1267
ER -