In contrast with recent advances on the dynamics of the flow at a forest edge, few studies have considered its role on scalar transport and, in particular, on CO2 transfer. The present study addresses the influence of the abrupt roughness change on forest atmosphere CO2 exchange and contrasts the concentration and flux fields against those of a uniform forested surface. We use an atmospheric boundary layer two-equation closure model that accounts for the flow dynamics and vertical divergence of CO2 sources/sinks within a plant canopy. This paper characterizes the spatial variation of CO2 fluxes as a function of both sources/sinks distribution and the vertical structure of the canopy. Results suggest that the ground source plays a major role in the formation of wave-like vertical CO2 flux behavior downwind of a forest edge, despite the fact that the contribution of foliage sources/sinks changes monotonously. Such a variation is caused by scalar advection in the trunk space and reveals itself as a decrease or increase in vertical fluxes over the forest relative to carbon dioxide exchange of the underlying forest. The effect was more pronounced in model forests where the leaf area is concentrated in the upper part of the canopy. These results can be useful both for interpretation of existing measurements of net ecosystem exchange of CO2 (NEE) from flux towers in limited fetch conditions and in planning future CO2 transport experiments.