COORDINATE-BASED META-ANALYTIC SEARCH   FOR THE SPM NEUROIMAGING PIPELINE: The BredeQuery plugin for SPM5

Bartlomiej Wilkowski; Marcin Szewczyk; Peter Mondrup Rasmussen; Lars Kai Hansen; Finn Årup Nielsen

COORDINATE-BASED META-ANALYTIC SEARCH FOR THE SPM NEUROIMAGING PIPELINE: The BredeQuery plugin for SPM5

Bartlomiej Wilkowski
, Marcin Szewczyk
, Peter Mondrup Rasmussen
, Lars Kai Hansen
, Finn Årup Nielsen

Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

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Abstract

Large amounts of neuroimaging studies are collected and have changed our view on human brain function. By integrating multiple studies in meta-analysis a more complete picture is emerging. Brain locations are usually reported as coordinates with reference to a specific brain atlas, thus some of the databases offer so- called coordinate-based searching to the users (e.g. Brede, BrainMap). For such search, the publications, which relate to the brain locations represented by the user coordinates, are retrieved. In this paper we present BredeQuery – a plugin for the widely used SPM5 data analytic pipeline. BredeQuery offers a direct link from SPM5 to the Brede Database coordinate-based search engine. BredeQuery is able to ‘grab’ brain location coordinates from the SPM windows and enter them as a query for the Brede Database. Moreover, results of the query can be displayed in an SPM window and/or exported directly to some popular bibliographic file formats (BibTeX, Reference Manager, etc).

Original language	English
Title of host publication	HEALTHINF 2009 : Proceedings of the Second International Conference on Health Informatics
Place of Publication	Portugal
Publisher	Institute for Systems and Technologies of Information, Control and Communication
Publication date	2009
Pages	11-17
ISBN (Print)	98-98-11163-1
Publication status	Published - 2009
Event	2009 International Joint Conference on Biomedical Engineering Systems and Technologies - Porto, Portugal Duration: 14 Jan 2009 → 17 Jan 2009

Conference

Conference	2009 International Joint Conference on Biomedical Engineering Systems and Technologies
Country/Territory	Portugal
City	Porto
Period	14/01/2009 → 17/01/2009

Keywords

SPM, fMRI, PET, neuroinformatics, Talairach, MNI, brain region, brain function, brain activity, article re- trieval, coordinate-based search, bibtex, Brede Database, ontology

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Cite this

Wilkowski, B., Szewczyk, M., Rasmussen, P. M., Hansen, L. K., & Nielsen, F. Å. (2009). COORDINATE-BASED META-ANALYTIC SEARCH FOR THE SPM NEUROIMAGING PIPELINE: The BredeQuery plugin for SPM5. In HEALTHINF 2009: Proceedings of the Second International Conference on Health Informatics (pp. 11-17). Institute for Systems and Technologies of Information, Control and Communication. http://www2.imm.dtu.dk/pubdb/views/publication_details.php?id=5706

Wilkowski, Bartlomiej ; Szewczyk, Marcin ; Rasmussen, Peter Mondrup et al. / COORDINATE-BASED META-ANALYTIC SEARCH FOR THE SPM NEUROIMAGING PIPELINE : The BredeQuery plugin for SPM5. HEALTHINF 2009: Proceedings of the Second International Conference on Health Informatics. Portugal : Institute for Systems and Technologies of Information, Control and Communication, 2009. pp. 11-17

@inproceedings{0d35f5b5ba3a4b7486203210b0ba14c9,

title = "COORDINATE-BASED META-ANALYTIC SEARCH FOR THE SPM NEUROIMAGING PIPELINE: The BredeQuery plugin for SPM5",

abstract = "Large amounts of neuroimaging studies are collected and have changed our view on human brain function. By integrating multiple studies in meta-analysis a more complete picture is emerging. Brain locations are usually reported as coordinates with reference to a specific brain atlas, thus some of the databases offer so- called coordinate-based searching to the users (e.g. Brede, BrainMap). For such search, the publications, which relate to the brain locations represented by the user coordinates, are retrieved. In this paper we present BredeQuery {\textendash} a plugin for the widely used SPM5 data analytic pipeline. BredeQuery offers a direct link from SPM5 to the Brede Database coordinate-based search engine. BredeQuery is able to {\textquoteleft}grab{\textquoteright} brain location coordinates from the SPM windows and enter them as a query for the Brede Database. Moreover, results of the query can be displayed in an SPM window and/or exported directly to some popular bibliographic file formats (BibTeX, Reference Manager, etc).",

keywords = "SPM, fMRI, PET, neuroinformatics, Talairach, MNI, brain region, brain function, brain activity, article re- trieval, coordinate-based search, bibtex, Brede Database, ontology",

author = "Bartlomiej Wilkowski and Marcin Szewczyk and Rasmussen, \{Peter Mondrup\} and Hansen, \{Lars Kai\} and Nielsen, \{Finn {\AA}rup\}",

year = "2009",

language = "English",

isbn = "98-98-11163-1",

pages = "11--17",

booktitle = "HEALTHINF 2009",

publisher = "Institute for Systems and Technologies of Information, Control and Communication",

note = "2009 International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2009 ; Conference date: 14-01-2009 Through 17-01-2009",

}

Wilkowski, B, Szewczyk, M, Rasmussen, PM, Hansen, LK & Nielsen, FÅ 2009, COORDINATE-BASED META-ANALYTIC SEARCH FOR THE SPM NEUROIMAGING PIPELINE: The BredeQuery plugin for SPM5. in HEALTHINF 2009: Proceedings of the Second International Conference on Health Informatics. Institute for Systems and Technologies of Information, Control and Communication, Portugal, pp. 11-17, 2009 International Joint Conference on Biomedical Engineering Systems and Technologies, Porto, Portugal, 14/01/2009. <http://www2.imm.dtu.dk/pubdb/views/publication_details.php?id=5706>

COORDINATE-BASED META-ANALYTIC SEARCH FOR THE SPM NEUROIMAGING PIPELINE: The BredeQuery plugin for SPM5. / Wilkowski, Bartlomiej; Szewczyk, Marcin; Rasmussen, Peter Mondrup et al.
HEALTHINF 2009: Proceedings of the Second International Conference on Health Informatics. Portugal: Institute for Systems and Technologies of Information, Control and Communication, 2009. p. 11-17.

Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

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T2 - 2009 International Joint Conference on Biomedical Engineering Systems and Technologies

AU - Wilkowski, Bartlomiej

AU - Szewczyk, Marcin

AU - Rasmussen, Peter Mondrup

AU - Hansen, Lars Kai

AU - Nielsen, Finn Årup

PY - 2009

Y1 - 2009

N2 - Large amounts of neuroimaging studies are collected and have changed our view on human brain function. By integrating multiple studies in meta-analysis a more complete picture is emerging. Brain locations are usually reported as coordinates with reference to a specific brain atlas, thus some of the databases offer so- called coordinate-based searching to the users (e.g. Brede, BrainMap). For such search, the publications, which relate to the brain locations represented by the user coordinates, are retrieved. In this paper we present BredeQuery – a plugin for the widely used SPM5 data analytic pipeline. BredeQuery offers a direct link from SPM5 to the Brede Database coordinate-based search engine. BredeQuery is able to ‘grab’ brain location coordinates from the SPM windows and enter them as a query for the Brede Database. Moreover, results of the query can be displayed in an SPM window and/or exported directly to some popular bibliographic file formats (BibTeX, Reference Manager, etc).

AB - Large amounts of neuroimaging studies are collected and have changed our view on human brain function. By integrating multiple studies in meta-analysis a more complete picture is emerging. Brain locations are usually reported as coordinates with reference to a specific brain atlas, thus some of the databases offer so- called coordinate-based searching to the users (e.g. Brede, BrainMap). For such search, the publications, which relate to the brain locations represented by the user coordinates, are retrieved. In this paper we present BredeQuery – a plugin for the widely used SPM5 data analytic pipeline. BredeQuery offers a direct link from SPM5 to the Brede Database coordinate-based search engine. BredeQuery is able to ‘grab’ brain location coordinates from the SPM windows and enter them as a query for the Brede Database. Moreover, results of the query can be displayed in an SPM window and/or exported directly to some popular bibliographic file formats (BibTeX, Reference Manager, etc).

KW - SPM, fMRI, PET, neuroinformatics, Talairach, MNI, brain region, brain function, brain activity, article re- trieval, coordinate-based search, bibtex, Brede Database, ontology

M3 - Article in proceedings

SN - 98-98-11163-1

SP - 11

EP - 17

BT - HEALTHINF 2009

PB - Institute for Systems and Technologies of Information, Control and Communication

CY - Portugal

Y2 - 14 January 2009 through 17 January 2009

ER -