Continuous molecular evolution of protein-domain structures by single amino acid changes

Sebastian Meier, Pernille Rose Jensen, Charles N. David, Jarrod Chapman, Thomas W. Holstein, Stephan Grzesiek, Suat Ozbek

Research output: Contribution to journalJournal articleResearchpeer-review

Abstract

Protein structures cluster into families of folds that can result from extremely different amino acid sequences [11]. Because the enormous amount of genetic information generates a limited number of protein folds [2], a particular domain structure often assumes numerous functions. How new protein structures and new functions evolve under these limitations remains elusive. Molecular evolution may be driven by the ability of biomacromolecules to adopt multiple conformations as a bridge between different folds [3-6]. This could allow proteins to explore new structures and new tasks while part of the structural ensemble retains the initial conformation and function as a safeguard [7]. Here we show that a global structural switch can arise from single amino acid changes in cysteine-rich domains (CRD) of cnidarian nematocyst proteins. The ability of these CRDs to form two structures with different disulfide patterns from an identical cysteine pattern is distinctive [8]. By applying a structure-based mutagenesis approach, we demonstrate that a cysteine-rich domain can interconvert between two natively occurring domain structures via a bridge state containing both structures. Comparing cnidarian CRD sequences leads us to believe that the mutations we introduced to stabilize each structure reflect the birth of new protein folds in evolution.
Original languageEnglish
JournalCurrent Biology
Volume17
Issue number2
Pages (from-to)173-178
ISSN0960-9822
DOIs
Publication statusPublished - 2007
Externally publishedYes

Keywords

  • Amino Acid Sequence
  • Amino Acid Substitution
  • Animals
  • Cysteine
  • Evolution, Molecular
  • Hydra
  • Molecular Sequence Data
  • Mutation, Missense
  • Protein Conformation
  • Proteins
  • K848JZ4886 Cysteine
  • cysteine
  • protein
  • amino acid sequence
  • amino acid substitution
  • animal
  • article
  • chemistry
  • coelenterate
  • genetics
  • missense mutation
  • molecular evolution
  • molecular genetics
  • protein conformation
  • EVO_ECOL
  • PROTEINS
  • BIOCHEMISTRY
  • CONFORMATIONAL DIVERSITY
  • HYDRA NEMATOCYSTS
  • SEQUENCE SPACE
  • MINICOLLAGEN
  • FOLD
  • NOWA
  • global structural switch
  • Invertebrata Animalia (Animals, Invertebrates) - Cnidaria [41000] Hydra genus
  • amino acid
  • cysteine-rich domain
  • protein domain
  • 10060, Biochemistry studies - General
  • 10064, Biochemistry studies - Proteins, peptides and amino acids
  • 64008, Invertebrata: comparative, experimental morphology, physiology and pathology - Cnidaria
  • Biochemistry and Molecular Biophysics

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