Abstract
Consistent force fields for carbohydrates were hitherto developed
by extensive optimization ofpotential energy function parameters
on experimental data and on ab initio results. A wide range of
experimental data is used: internal structures obtained from gas
phase electron diffraction and from x-ray and neutron diffraction,
vibrational frequencies, dipolemoments, unit cell dimensions and
lattice energies. The range of model compounds covered so far
includes alkanes, ethers, alcohols, ketones and mono- and
disaccharides. Electrostatic interactions are handled by
fractional charges assigned to individual atoms. Charges are
modeled such that Mulliken population analyses are reproduced.
Morse functions are used for all bonded interactions;
experimentally deriveddissociation energies are used as
parameters. Van der Waals interactions are modeled with
Lennard-Jones 12-6 functions.The anomeric and exo-anomeric effects
are accounted for without addition of specific terms. The work is
done in the framework of the Consistent Force Field which
originatedin Israel and was further developed in Denmark. The
actual methods and strategies employed havebeen described
previously. Extensive testing of the force field is reported, and
ways and means ofimprovement are indicated. Principles of mapping
of conformational space are discussed, and adiscussion on which
properties to preferentially reproduce in modeling is invited.
| Original language | English |
|---|---|
| Journal | J. Carbohydrate Chemistry |
| Volume | 18(7) |
| Pages (from-to) | 789-805 |
| Publication status | Published - 1999 |
| Event | XIX International Carbohydrate Symposium - San Diego,CA, United States Duration: 9 Aug 1998 → 14 Aug 1998 Conference number: 19 |
Conference
| Conference | XIX International Carbohydrate Symposium |
|---|---|
| Number | 19 |
| Country/Territory | United States |
| City | San Diego,CA |
| Period | 09/08/1998 → 14/08/1998 |