Conservation and turnover of miRNAs and their highly complementary targets in early branching animals

Daniela Praher, Bob Zimmermann, Rohit Dnyansagar, David J. Miller, Aurelie Moya, Vengamanaidu Modepalli, Arie Fridrich, Daniel Sher, Lene Friis-Møller, Per Sundberg, Sylvain Fôret, Regan Ashby, Yehu Moran*, Ulrich Technau*

*Corresponding author for this work

Research output: Contribution to journalJournal articleResearchpeer-review

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Abstract

MicroRNAs (miRNAs) are crucial post-transcriptional regulators that have been extensively studied in Bilateria, a group comprising the majority of extant animals, where more than 30 conserved miRNA families have been identified. By contrast, bilaterian miRNA targets are largely not conserved. Cnidaria is the sister group to Bilateria and thus provides a unique opportunity for comparative studies. Strikingly, like their plant counterparts, cnidarian miRNAs have been shown to predominantly have highly complementary targets leading to transcript cleavage by Argonaute proteins. Here, we assess the conservation of miRNAs and their targets by small RNA sequencing followed by miRNA target prediction in eight species of Anthozoa (sea anemones and corals), the earliest-branching cnidarian class. We uncover dozens of novel miRNAs but only a few conserved ones. Further, given their high complementarity, we were able to computationally identify miRNA targets in each species. Besides evidence for conservation of specific miRNA target sites, which are maintained between sea anemones and stony corals across 500 Myr of evolution, we also find indications for convergent evolution of target regulation by different miRNAs. Our data indicate that cnidarians have only few conserved miRNAs and corresponding targets, despite their high complementarity, suggesting a high evolutionary turnover.
Original languageEnglish
Article number20203169
JournalProceedings of the Royal Society B: Biological Sciences
Volume288
Issue number1945
Number of pages10
ISSN0962-8452
DOIs
Publication statusPublished - 2021

Keywords

  • MicroRNAS
  • MiRNAS
  • Cnidaria
  • Conservation
  • Turnover
  • MicroRNA targets

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