Computing Pathways in Bio-Models Derived from Bio-Science Text Sources

Troels Andreasen, Henrik Bulskov, Jørgen Fischer Nilsson, Per Anker Jensen

Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

Abstract

This paper outlines a system, OntoScape, serving to accomplish complex inference tasks on knowledge bases and bio-models derived from life-science text corpora. The system applies so-called natural logic, a form of logic which is readable for humans. This logic affords ontological representations of complex terms appearing in the text sources. Along with logical propositions, the system applies a semantic graph representation facilitating calculation of bio-pathways. More generally, the system aords means of query answering appealing to general and domain specic inference rules.
Original languageEnglish
Title of host publicationProceedings IWBBIO 2014
Number of pages10
Publication date2015
Pages217-226
Publication statusPublished - 2015
Event2nd International Work-conference on Bioinformatics and Biomedical Engineering, Iwbbio 2014, Granada, Spain, April 7-9, 2014 - Universidad de Granada, Granada, Spain
Duration: 7 Apr 20149 Apr 2014

Conference

Conference2nd International Work-conference on Bioinformatics and Biomedical Engineering, Iwbbio 2014, Granada, Spain, April 7-9, 2014
LocationUniversidad de Granada
CountrySpain
CityGranada
Period07/04/201409/04/2014

Keywords

  • Semantic Text Processing in Bio-Informatics
  • Bio-models using Natural Logic and Semantic Graphs
  • Pathway Computation

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