Characterization of an L-arabinose isomerase from Bacillus subtilis

Jin-Ha Kim, Ponnandy Prabhu, Marimuthu Jeya, Manish Kumar Tiwari, Hee-Jung Moon, Raushan Kumar Singh, Jung-Kul Lee

Research output: Contribution to journalJournal articleResearchpeer-review

Abstract

An isolated gene from Bacillus subtilis str. 168 encoding a putative isomerase was proposed as an Larabinose isomerase (L-AI), cloned into Escherichia coli, and its nucleotide sequence was determined. DNA sequence analysis revealed an open reading frame of 1,491 bp, capable of encoding a polypeptide of 496 amino acid residues. The gene was overexpressed in E. coli and the protein was purified using nickel-nitrilotriacetic acid chromatography. The purified enzyme showed the highest catalytic efficiency ever reported, with a kcat of 14,504 min−1 and a kcat/Km of 121 min−1mM−1 for Larabinose. A homology model of B. subtilis L-AI was constructed based on the X-ray crystal structure of E. coli LAI. Molecular dynamics simulation studies of the enzyme with the natural substrate, L-arabinose, and an analogue, Dgalactose,
shed light on the unique substrate specificity displayed by B. subtilis L-AI only towards L-arabinose. Although L-AIs have been characterized from several other sources, B. subtilis L-AI is distinguished from other L-AIs by its high substrate specificity and catalytic efficiency for
L-arabinose
Original languageEnglish
JournalApplied Microbiology and Biotechnology
Volume85
Pages (from-to)1839–1847
ISSN0175-7598
DOIs
Publication statusPublished - 2010
Externally publishedYes

Keywords

  • L-arabinose isomerase
  • Bacillus subtilis
  • Characterization
  • Homology modeling
  • Substrate specificity

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