Bacterial diversity in snow on North Pole ice floes

Aviaja Zenia Edna Lyberth Hauptmann, Marek Stibal, Jacob Bælum, Thomas Sicheritz-Pontén, Søren Brunak, Jeff S. Bowman, Lars H. Hansen, Carsten S. Jacobsen, Nikolaj Blom

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Abstract

The microbial abundance and diversity in snow on ice floes at three sites near the North Pole was assessed using quantitative PCR and 454 pyrosequencing. Abundance of 16S rRNA genes in the samples ranged between 43 and 248 gene copies per millilitre of melted snow. A total of 291,331 sequences were obtained through 454 pyrosequencing of 16S rRNA genes, resulting in 984 OTUs at 97 % identity. Two sites were dominated by Cyanobacteria (72 and 61 %, respectively), including chloroplasts. The third site differed by consisting of 95 % Proteobacteria. Principal component analysis showed that the three sites clustered together when compared to the underlying environments of sea ice and ocean water. The Shannon indices ranged from 2.226 to 3.758, and the Chao1 indices showed species richness between 293 and 353 for the three samples. The relatively low abundances and diversity found in the samples indicate a lower rate of microbial input to this snow habitat compared to snow in the proximity of terrestrial and anthropogenic sources of microorganisms. The differences in species composition and diversity between the sites show that apparently similar snow habitats contain a large variation in biodiversity, although the differences were smaller than the differences to the underlying environment. The results support the idea that a globally distributed community exists in snow and that the global snow community can in part be attributed to microbial input from the atmosphere.
Original languageEnglish
JournalExtremophiles
Volume18
Pages (from-to)945-951
Number of pages7
ISSN1431-0651
DOIs
Publication statusPublished - 2014

Bibliographical note

© The Author(s) 2014. This article is published with open access at Springerlink.com

Keywords

  • Polar microbiology
  • Arctic
  • Bacterial diversity
  • Pyrosequencing
  • Snow

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