Automated composition of scientific workflows in mass spectrometry-based proteomics

Anna Lena Lamprecht, Magnus Palmblad, Jon Ison, Veit Schwammle

Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

Abstract

Numerous software utilities operating on mass spectrometry (MS) data are described in the literature that provide specific operations as building blocks for the assembly of purposespecific workflows. Working out which tools and combinations are applicable or optimal is often hard: insufficient annotation of tool functions and interfaces impedes finding viable tool combinations, and potentially compatible tools may not, in practice, operate together. Thus researchers face difficulties in selecting practical and effective data analysis pipelines for a specific experimental design.

Original languageEnglish
Title of host publicationProceedings of 14th International Conference on eScience
PublisherIEEE
Publication date24 Dec 2018
Pages360-361
Article number8588717
ISBN (Electronic)9781538691564
DOIs
Publication statusPublished - 24 Dec 2018
Event14th IEEE International Conference on eScience, e-Science 2018 - Amsterdam, Netherlands
Duration: 29 Oct 20181 Nov 2018
https://www.escience2018.com/

Conference

Conference14th IEEE International Conference on eScience, e-Science 2018
CountryNetherlands
CityAmsterdam
Period29/10/201801/11/2018
Internet address

Keywords

  • Automated workflow composition
  • Bio.tools
  • ELIXIR
  • Mass spectrometry
  • Proteomics
  • Scientific workflows
  • Semantic domain modeling
  • Workflow management systems

Cite this

Lamprecht, A. L., Palmblad, M., Ison, J., & Schwammle, V. (2018). Automated composition of scientific workflows in mass spectrometry-based proteomics. In Proceedings of 14th International Conference on eScience (pp. 360-361). [8588717] IEEE. https://doi.org/10.1109/eScience.2018.00098
Lamprecht, Anna Lena ; Palmblad, Magnus ; Ison, Jon ; Schwammle, Veit. / Automated composition of scientific workflows in mass spectrometry-based proteomics. Proceedings of 14th International Conference on eScience. IEEE, 2018. pp. 360-361
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Lamprecht, AL, Palmblad, M, Ison, J & Schwammle, V 2018, Automated composition of scientific workflows in mass spectrometry-based proteomics. in Proceedings of 14th International Conference on eScience., 8588717, IEEE, pp. 360-361, 14th IEEE International Conference on eScience, e-Science 2018, Amsterdam, Netherlands, 29/10/2018. https://doi.org/10.1109/eScience.2018.00098

Automated composition of scientific workflows in mass spectrometry-based proteomics. / Lamprecht, Anna Lena; Palmblad, Magnus; Ison, Jon; Schwammle, Veit.

Proceedings of 14th International Conference on eScience. IEEE, 2018. p. 360-361 8588717.

Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

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Lamprecht AL, Palmblad M, Ison J, Schwammle V. Automated composition of scientific workflows in mass spectrometry-based proteomics. In Proceedings of 14th International Conference on eScience. IEEE. 2018. p. 360-361. 8588717 https://doi.org/10.1109/eScience.2018.00098