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Artificial intelligence for natural product drug discovery

  • Michael W. Mullowney
  • , Katherine R. Duncan
  • , Somayah S. Elsayed
  • , Neha Garg
  • , Justin J.J. van der Hooft
  • , Nathaniel I. Martin
  • , David Meijer
  • , Barbara R. Terlouw
  • , Friederike Biermann
  • , Kai Blin
  • , Janani Durairaj
  • , Marina Gorostiola González
  • , Eric J.N. Helfrich
  • , Florian Huber
  • , Stefan Leopold-Messer
  • , Kohulan Rajan
  • , Tristan de Rond
  • , Jeffrey A. van Santen
  • , Maria Sorokina
  • , Marcy J. Balunas
  • Mehdi A. Beniddir, Doris A. van Bergeijk, Laura M. Carroll, Chase M. Clark, Djork Arné Clevert, Chris A. Dejong, Chao Du, Scarlet Ferrinho, Francesca Grisoni, Albert Hofstetter, Willem Jespers, Olga V. Kalinina, Satria A. Kautsar, Hyunwoo Kim, Tiago F. Leao, Joleen Masschelein, Evan R. Rees, Raphael Reher, Daniel Reker, Philippe Schwaller, Marwin Segler, Michael A. Skinnider, Allison S. Walker, Egon L. Willighagen, Barbara Zdrazil, Nadine Ziemert, Rebecca J.M. Goss, Pierre Guyomard, Andrea Volkamer, William H. Gerwick, Hyun Uk Kim, Rolf Müller, Gilles P. van Wezel, Gerard J.P. van Westen*, Anna K.H. Hirsch*, Roger G. Linington*, Serina L. Robinson*, Marnix H. Medema*
*Corresponding author for this work
    • The University of Chicago
    • University of Strathclyde
    • Leiden University
    • Georgia Institute of Technology
    • University of Basel
    • Swiss Federal Institute of Technology Zurich
    • Friedrich Schiller University Jena
    • The University of Auckland
    • Simon Fraser University
    • University of Michigan, Ann Arbor
    • Université Paris-Saclay
    • European Molecular Biology Laboratory
    • University of Wisconsin-Madison
    • Pfizer
    • University of St Andrews
    • Eindhoven University of Technology
    • Dongguk University
    • Universidade de São Paulo
    • KU Leuven
    • University of Marburg
    • Swiss Federal Institute of Technology Lausanne
    • University of British Columbia
    • Vanderbilt University
    • Maastricht University
    • University of Tübingen
    • Université de Lille
    • Charité – Universitätsmedizin Berlin
    • University of California at San Diego
    • Korea Advanced Institute of Science and Technology
    • Swiss Federal Institute of Aquatic Science and Technology
    • Hochschule Düsseldorf
    • Adapsyn Bioscience Inc.
    • Scripps Research Institute
    • Duke University
    • Microsoft Research Cambridge
    • Wageningen University & Research
    • Goethe University Frankfurt
    • Helmholtz Centre for Infection Research
    • Saarland University

    Research output: Contribution to journalReviewpeer-review

    Abstract

    Developments in computational omics technologies have provided new means to access the hidden diversity of natural products, unearthing new potential for drug discovery. In parallel, artificial intelligence approaches such as machine learning have led to exciting developments in the computational drug design field, facilitating biological activity prediction and de novo drug design for molecular targets of interest. Here, we describe current and future synergies between these developments to effectively identify drug candidates from the plethora of molecules produced by nature. We also discuss how to address key challenges in realizing the potential of these synergies, such as the need for high-quality datasets to train deep learning algorithms and appropriate strategies for algorithm validation.
    Original languageEnglish
    JournalNature Reviews Drug Discovery
    Volume22
    Pages (from-to)895-916
    ISSN1474-1776
    DOIs
    Publication statusPublished - 2023

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