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Approximate Constrained Lumping of Polynomial Differential Equations

  • Alexander Leguizamon-Robayo*
  • , Antonio Jiménez-Pastor
  • , Micro Tribastone
  • , Max Tschaikowski
  • , Andrea Vandin
  • *Corresponding author for this work
  • Aalborg University
  • IMT Institute for Advanced Studies Lucca

Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

Abstract

In life sciences, deriving insights from dynamic models can be challenging due to the large number of state variables involved. To address this, model reduction techniques can be used to project the system onto a lower-dimensional state space. Constrained lumping can reduce systems of ordinary differential equations with polynomial derivatives up to linear combinations of the original variables while preserving specific output variables of interest. Exact reductions may be too restrictive in practice for biological systems since quantitative information is often uncertain or subject to estimations and measurement errors. This might come at the cost of limiting the actual aggregation power of exact reduction techniques. We propose an extension of exact constrained lumping which relaxes the exactness requirements up to a given tolerance parameter ε. We prove that the accuracy, i.e., the difference between the output variables in the original and reduced model, is in the order of ε. Furthermore, we provide a heuristic algorithm to find the smallest ε for a given maximal approximation error. Finally, we demonstrate the approach in biological models from the literature by providing coarser aggregations than exact lumping while accurately capturing the original system dynamics.
Original languageEnglish
Title of host publicationProceedings of the 21st International Conference on Computational Methods in Systems Biology, CMSB
Volume14137
PublisherSpringer
Publication date2023
Pages106-123
ISBN (Print)978-3-031-42696-4
ISBN (Electronic)978-3-031-42697-1
DOIs
Publication statusPublished - 2023
Event21st International Conference on Computational Methods in Systems Biology - Luxembourg City, Luxembourg
Duration: 13 Sept 2023 → 15 Sept 2023

Conference

Conference21st International Conference on Computational Methods in Systems Biology
Country/TerritoryLuxembourg
CityLuxembourg City
Period13/09/2023 → 15/09/2023

Keywords

  • Approximate reduction
  • Dynamical systems
  • Constrained lumping

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