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Publications per year
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2024
Diarrhoeagenic Escherichia coli and Salmonella spp. Contamination of Food and Water Consumed by Children with Diarrhoea in Maputo, Mozambique
Faife, S., Macuamule, C., Gichure, J., Hald, T. & Buys, E., 2024, In: International Journal of Environmental Research and Public Health. 21, 9, 13 p., 1122.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile3 Downloads (Pure) -
Etiology-specific incidence and mortality of diarrheal diseases in the African region: a systematic review and meta-analysis
Thystrup, C., Majowicz, S. E., Kitila, D. B., Desta, B. N., Fayemi, O. E., Ayolabi, C. I., Hugho, E., Buys, E. M., Akanni, G. B., Machava, N. E., Monjane, C., Hald, T. & Pires, S. M., 2024, In: BMC Public Health. 24, 1, 26 p., 1864.Research output: Contribution to journal › Review › peer-review
Open AccessFile88 Downloads (Pure) -
High diversity of Salmonella spp. from children with diarrhea, food, and environmental sources in Kilimanjaro – Tanzania: one health approach
Hugho, E. A., Kumburu, H. H., Thomas, K., Lukambagire, A. S., Wadugu, B., Amani, N., Kinabo, G., Hald, T. & Mmbaga, B. T., 2024, In: Frontiers in Microbiology. 14, 11 p., 1277019.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile257 Downloads (Pure) -
Outbreak detection in Harar town and Kersa district, Ethiopia using phylogenetic analysis and source attribution
Thystrup, C., Hald, T., Belina, D. & Gobena, T., 2024, In: BMC Infectious Diseases. 24, 1, 11 p., 864.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile36 Downloads (Pure) -
Prevalence of Protozoan Pathogens Among Diarrheic Children Under 5 Years in Public Hospital of Ethiopia During the Global COVID 19 Pandemic
Gobena, T., Belina, D., Hald, T. & Pires, S. M., 2024, In: INQUIRY: The Journal of Health Care Organization, Provision, and Financing . 61, 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile193 Downloads (Pure) -
2023
Analysis of reservoir sources of Campylobacter isolates to free-range broilers in Denmark
Lassen, B., Takeuchi-Storm, N., Henri, C., Hald, T., Sandberg, M. & Ellis-Iversen, J., 2023, In: Poultry Science. 102, 11, 8 p., 103025.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile401 Downloads (Pure) -
Antimicrobial resistance monitoring in the Danish swine production by phenotypic methods and metagenomics from 1999 to 2018
Duarte, A. S. R., Marques, A. R., Andersen, V. D., Korsgaard, H. B., Mordhorst, H., Møller, F. D., Petersen, T. N., Vigre, H., Hald, T. & Aarestrup, F. M., 2023, In: Eurosurveillance. 28, 20, 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile57 Downloads (Pure) -
Comparison of Source Attribution Methodologies for Human Campylobacteriosis
Brinch, M. L., Hald, T., Wainaina, L., Merlotti, A., Remondini, D., Henri, C. & Njage, P. M. K., 2023, In: Pathogens. 12, 6, 13 p., 786.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile347 Downloads (Pure) -
Enteric Pathogens Detected in Children under Five Years Old Admitted with Diarrhea in Moshi, Kilimanjaro, Tanzania
Hugho, E. A., Kumburu, H. H., Amani, N. B., Mseche, B., Maro, A., Ngowi, L. E., Kyara, Y., Kinabo, G., Thomas, K. M., Houpt, E. R., Liu, J., Hald, T. & Mmbaga, B. T., 2023, In: Pathogens. 12, 4, 11 p., 618.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile79 Downloads (Pure) -
Molecular Characterization of Hetero-Pathogenic and Diarrheagenic Escherichia coli Pathotypes in Diarrheic Children under Five Years and Exposure Environment in Ogun State, South-West Nigeria
Ogunbiyi, T. S., Fayemi, O. E., Akanni, G. B., Ayolabi, C. I. & Hald, T., 2023, In: Pathogens. 12, 11, 17 p., 1358.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile331 Downloads (Pure) -
Occurrence of Diarrheagenic Pathogens and Their Coinfection Profiles in Diarrheic Under Five Children and Tracked Human Contacts in Urban and Rural Settings of Eastern Ethiopia
Belina, D., Gobena, T., Kebede, A., Chimdessa, M., Hailu, Y. & Hald, T., 2023, In: Microbiology Insights. 16, 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile419 Downloads (Pure) -
Outcome and future perspectives of One Health collaborations
Jokelainen, P., Sandberg, M. & Hald, T., 2023, Annual Report on Zoonoses in Denmark 2022. Lassen, B., Olsen, A., Sandberg, M., Müller, L., Torpdahl, M. & Petersen, C. K. (eds.). Kgs. Lyngby: National Food Institute, Technical University of Denmark, p. 30-34 5 p. (Annual Report on Zoonoses in Denmark).Research output: Chapter in Book/Report/Conference proceeding › Report chapter › Research
Open AccessFile128 Downloads (Pure) -
Risk assessment of the removal of the requirement for storing shell eggs refrigerated in the table-egg production
Ribeiro Duarte, A. S. & Hald, T., 2023, National Food Institute, Technical University of Denmark. 29 p.Research output: Book/Report › Report › Commissioned
Open AccessFile505 Downloads (Pure) -
2022
Practicalities of implementing burden of disease research in Africa: lessons from a population survey component of our multi-partner FOCAL research project
Desta, B. N., Gobena, T., Macuamule, C., Fayemi, O. E., Ayolabi, C. I., Mmbaga, B. T., Thomas, K. M., Dodd, W., Pires, S. M., Majowicz, S. E. & Hald, T., 2022, In: Emerging Themes in Epidemiology. 19, 1, 12 p., 4.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile139 Downloads (Pure) -
Risk and sustainability: trade-offs and synergies for robust decision making
Hauschild, M. Z., McKone, T. E., Arnbjerg-Nielsen, K., Hald, T., Nielsen, B. F., Mabit, S. E. & Fantke, P., 2022, In: Environmental Sciences Europe. 34, 13 p., 11.Research output: Contribution to journal › Comment/debate › Research › peer-review
Open AccessFile114 Downloads (Pure) -
Source Attribution of Human Campylobacteriosis Using Whole-Genome Sequencing Data and Network Analysis
Wainaina, L., Merlotti, A., Remondini, D., Henri, C., Hald, T. & Njage, P. M. K., 2022, In: Pathogens. 11, 6, 15 p., 645.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile76 Downloads (Pure) -
Sources and trends of human salmonellosis in Europe, 2015–2019: An analysis of outbreak data
Pinedo, L. C., Mughini-Gras, L., Franz, E., Hald, T. & Pires, S. M., 2022, In: International Journal of Food Microbiology. 379, 10 p., 109850.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile187 Downloads (Pure) -
System Mapping of Antimicrobial Resistance to Combat a Rising Global Health Crisis
Matthiessen, L. E., Hald, T. & Vigre, H., 2022, In: Frontiers in Public Health. 10, 13 p., 816943.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile58 Downloads (Pure) -
2021
Attribution of illnesses transmitted by food and water to comprehensive transmission pathways using structured expert judgment, United States
Beshearse, E., Bruce, B. B., Nane, G. F., Cooke, R. M., Aspinall, W., Hald, T., Crim, S. M., Griffin, P. M., Fullerton, K. E., Collier, S. A., Benedict, K. M., Beach, M. J., Hall, A. J. & Havelaar, A. H., 2021, In: Emerging Infectious Diseases . 27, 1, p. 182-195Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile78 Downloads (Pure) -
Burden of foodborne diseases: think global, act local
Pires, S. M., Desta, B. N., Mughini-Gras, L., Mmbaga, B. T., Fayemi, O. E., Salvador, E. M., Gobena, T., Majowicz, S. E., Hald, T., Hoejskov, P. S., Minato, Y. & Devleesschauwer, B., 2021, In: Current Opinion in Food Science. 39, p. 152-159Research output: Contribution to journal › Review › peer-review
Open AccessFile275 Downloads (Pure) -
Editorial: Integrating Whole Genome Sequencing Into Source Attribution and Risk Assessment of Foodborne Bacterial Pathogens
Pasquali, F., Remondini, D., Snary, E. L., Hald, T. & Guillier, L., 2021, In: Frontiers in Microbiology. 12, 3 p., 795098.Research output: Contribution to journal › Editorial › peer-review
Open AccessFile86 Downloads (Pure) -
Genomic evolution of antimicrobial resistance in Escherichia coli
Leekitcharoenphon, P., Johansson, M. H. K., Munk, P., Malorny, B., Skarżyńska, M., Wadepohl, K., Moyano, G., Hesp, A., Veldman, K. T., Bossers, A., Graveland, H. (Member of author collaboration), van Essen, A. (Member of author collaboration), Battisti, A. (Member of author collaboration), Caprioli, A. (Member of author collaboration), Blaha, T. (Member of author collaboration), Hald, T. (Member of author collaboration), Daskalov, H. (Member of author collaboration), Saatkamp, H. W. (Member of author collaboration), Stärk, K. D. C. (Member of author collaboration) & Luiken, R. E. C. (Member of author collaboration) & 14 others, , 2021, In: Scientific Reports. 11, 12 p., 15108.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile172 Downloads (Pure) -
Metagenomics-Based Approach to Source-Attribution of Antimicrobial Resistance Determinants - Identification of Reservoir Resistome Signatures
Duarte, A. S. R., Röder, T., Van Gompel, L., Petersen, T. N., Hansen, R. B., Hansen, I. M., Bossers, A., Aarestrup, F. M., Wagenaar, J. A. & Hald, T., 2021, In: Frontiers in Microbiology. 11, 17 p., 601407.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile120 Downloads (Pure) -
Non-typhoidal human salmonellosis in Rio Grande do Sul, Brazil: A combined source attribution study of microbial subtyping and outbreak data
Neto, W. S., Leotti, V. B., Pires, S. M., Hald, T. & Corbellini, L. G., 2021, In: International Journal of Food Microbiology. 338, 10 p., 108992.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile130 Downloads (Pure) -
Prevalence and epidemiological distribution of selected foodborne pathogens in human and different environmental samples in Ethiopia: a systematic review and meta-analysis
Belina, D., Hailu, Y., Gobena, T., Hald, T. & Njage, P. M. K., 2021, In: One health outlook. 3, 1, 30 p., 19.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile166 Downloads (Pure) -
Vurdering af resultat fra nyt studie vedrørende sammenhæng mellem prænatal eksponering for nitrat i drikkevandet og størrelsen af nyfødte.
Hald, T. & Olesen, P. T., 2021, 10 p..Research output: Memorandum/exposition › Memorandum
Open AccessFile73 Downloads (Pure) -
2020
AB_SA: Accessory genes-Based Source Attribution – tracing the source of Salmonella enterica Typhimurium environmental strains
Guillier, L., Gourmelon, M., Lozach, S., Cadel-Six, S., Vignaud, M.-L., Munck, N. S. M., Hald, T. & Palma, F., 2020, In: Microbial genomics. 6, 7, 10 p., 000366.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile122 Downloads (Pure) -
Addressing Learning Needs on the Use of Metagenomics in Antimicrobial Resistance Surveillance
Ribeiro Duarte, A. S., Stärk, K. D. C., Munk, P., Leekitcharoenphon, P., Bossers, A., Luiken, R., Sarrazin, S., Lukjancenko, O., Pamp, S. J., Bortolaia, V., Nissen, J. N., Kirstahler, P., Van Gompel, L., Poulsen, C. S., Kaas, R. S., Hellmér, M., Hansen, R. B., Gomez, V. M. & Hald, T., 2020, In: Frontiers in Public Health. 8, 10 p., 38.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile195 Downloads (Pure) -
Application of Whole-Genome Sequences and Machine Learning in Source Attribution of Salmonella Typhimurium
Munck, N. S. M., Njage, P. M. K., Leekitcharoenphon, P., Litrup, E. & Hald, T., 2020, In: Risk Analysis. 40, 9, p. 1693-1705Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile237 Downloads (Pure) -
Four European Salmonella Typhimurium datasets collected to develop WGS-based source attribution methods
Munck, N. S. M., Leekitcharoenphon, P., Litrup, E., Kaas, R. S., Meinen, A., Guillier, L., Tang, Y., Malorny, B., Palma, F., Borowiak, M., Gourmelon, M., Simon, S., Banerji, S., Petrovska, L., Dallman, T. J. & Hald, T., 2020, In: Scientific Data. 7, 1, 12 p., 75.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile131 Downloads (Pure) -
Network Approach to Source Attribution of Salmonella enterica Serovar Typhimurium and Its Monophasic Variant
Merlotti, A., Manfreda, G., Munck, N. S. M., Hald, T., Litrup, E., Nielsen, E. M., Remondini, D. & Pasquali, F., 2020, In: Frontiers in Microbiology. 11, 10 p., 1205.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile139 Downloads (Pure) -
Quantitative Microbial Risk Assessment Based on Whole Genome Sequencing Data: Case of Listeria monocytogenes
Njage, P. M. K., Leekitcharoenphon, P., Hansen, L. T., Hendriksen, R. S., Faes, C., Aerts, M. & Hald, T., 2020, In: Microorganisms. 8, 11, 24 p., 1772.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile112 Downloads (Pure) -
Source Attribution of Salmonella in Macadamia Nuts to Animal and Environmental Reservoirs in Queensland, Australia
Munck, N. S. M., Smith, J., Bates, J., Glass, K., Hald, T. & Kirk, M. D., 2020, In: Foodborne pathogens and disease. 17, 5, p. 357-364Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile90 Downloads (Pure) -
Using novel methodologies to support burden of disease estimates
Hald, T., 2020, In: European Journal of Public Health. 30, Suppl. 5, p. 350-351Research output: Contribution to journal › Conference abstract in journal › Research › peer-review
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2019
Attributable sources of community-acquired carriage of Escherichia coli containing β-lactam antibiotic resistance genes: a population-based modelling study
ESBL Attribution Consortium, 2019, In: The Lancet Planetary Health. 3, 8, p. e357-e369Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile238 Downloads (Pure) -
Development of a simplified on-farm animal health and welfare benchmarking tool for pig herds
Wadepohl, K., Blaha, T., Van Gompel, L., Duarte, A. S. R., Nielsen, C. L., Saatkamp, H., Wagenaar, J. A., Meemken, D., Graveland, H., Schmitt, H., Heederik, D., Luiken, R. E. C., Mevius, D., van Essen, A., Gonzalez-Zorn, B., Moyano, G., Saunders, P., Chauvin, C., David, J. & Battisti, A. & 10 others, , 2019, In: Berliner und Munchener Tierarztliche Wochenschrift. 132, 11-12, p. 504-512Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile142 Downloads (Pure) -
Global disease burden of pathogens in animal source foods, 2010
Li, M., Havelaar, A. H., Hoffmann, S., Hald, T., Kirk, M. D., Torgerson, P. R. & Devleesschauwer, B., 2019, In: PLOS ONE. 14, 6, 18 p., e0216545.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile318 Downloads (Pure) -
Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage
Hendriksen, R. S., Munk, P., Njage, P. M. K., van Bunnik, B., McNally, L., Lukjancenko, O., Röder, T., Nieuwenhuijse, D., Karlsmose Pedersen, S., Kjeldgaard, J. S., Kaas, R. S., Clausen, P. T. L. C., Vogt, J. K., Leekitcharoenphon, P., van de Schans, M. G. M., Zuidema, T., de Roda Husman, A. M., Rasmussen, S., Petersen, B. & Global, S. S. P. C. & 14 others, , 2019, In: Nature Communications. 10, 12 p., 1124.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile642 Downloads (Pure) -
Improving hazard characterization in microbial risk assessment using next generation sequencing data and machine learning: Predicting clinical outcomes in shigatoxigenic Escherichia coli
Njage, P. M. K., Leekitcharoenphon, P. & Hald, T., 2019, In: International Journal of Food Microbiology. 292, p. 72-82Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile143 Downloads (Pure) -
Machine Learning Methods as a Tool for Predicting Risk of Illness Applying Next-Generation Sequencing Data
Njage, P. M. K., Henri, C., Leekitcharoenphon, P., Mistou, M.-Y., Hendriksen, R. S. & Hald, T., 2019, In: Risk Analysis. 39, 6, p. 1397-1413 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile270 Downloads (Pure) -
Pathogen surveillance in the informal settlement, Kibera, Kenya, using a metagenomics approach
Hendriksen, R. S., Lukjancenko, O., Munk, P., Hjort Hjelmsø, M., Verani, J. R., Ng'eno, E., Bigogo, G., Kiplangat, S., Oumar, T., Bergmark, L., Röder, T., Neatherlin, J. C., Clayton, O., Hald, T., Karlsmose, S., Pamp, S. J., Fields, B., Montgomery, J. M. & Møller Aarestrup, F., 2019, In: P L o S One. 14, 10, 15 p., e0222531.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile220 Downloads (Pure) -
Probabilistic modeling for an integrated temporary acquired immunity with norovirus epidemiological data
Owusu-Ansah, E.D.-G. J., Barnes, B., Abaidoo, R., Tine, H., Dalsgaard, A., Permin, A. & Schou, T. W., 2019, In: Infectious Disease Modelling. 4, p. 99-114Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile278 Downloads (Pure) -
Salmonella control in poultry flocks and its public health impact
EFSA Panel on Biological Hazards (EFSA BIOHAZ Panel), 2019, In: EFSA Journal. 17, 2, 155 p., 5596.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile147 Downloads (Pure) -
Zoonoses in the Bolivian Amazon: alarming initial results from an NGO-led one health initiative
Robles, E. A., Martinez, E., Voigt, D. A., Durán, P., Hald, T., Quispe, E., Salazar, C., Salas, A. & Nielsen, L. R., 2019, In: International Journal of Infectious Diseases. 79, Suppl. 1, p. 5-6Research output: Contribution to journal › Conference abstract in journal › Research › peer-review
Open AccessFile290 Downloads (Pure) -
2018
Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries
Munk, P., Knudsen, B. E., Lukjacenko, O., Duarte, A. S. R., Van Gompel, L., Luiken, R. E. C., Smit, L. A. M., Schmitt, H., Garcia, A. D., Hansen, R. B., Petersen, T. N., Bossers, A., Ruppé, E., Graveland, H., van Essen, A., Gonzalez-Zorn, B., Moyano, G., Sanders, P., Chauvin, C. & David, J. & 21 others, , 1 Aug 2018, In: Nature Microbiology. 3, 8, p. 898-908Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile1204 Downloads (Pure) -
A One Health evaluation framework
Rüegg, S. R., Häsler, B., Nielsen, L. R., Buttigieg, S. C., Santa, M., Aragrande, M., Canali, M., Ehlinger, T., Queenan, K., Chantziaras, I., Boriani, E., Radeski, M., Bruce, M., Keune, H., Bennani, H., Ifejika Speranza, C., Carmo, L. P., Esposito, R., Filippitzi, M.-E. & McIntyre, K. M. & 8 others, , 2018, Integrated approaches to health - A handbook for the evaluation of One Health. Rüegg, S. R., Häsler, B. & Zinsstag, J. (eds.). The Netherlands: Wageningen Academic Publishers, p. 38-85 (Integrated Approaches To Health).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
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Environmental sustainable decision making – The need and obstacles for integration of LCA into decision analysis
Dong, Y., Miraglia, S., Manzo, S., Georgiadis, S., Sørup, H. J. D., Boriani, E., Hald, T., Thöns, S. & Hauschild, M. Z., 2018, In: Environmental Science and Policy. 87, p. 33-44Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile200 Downloads (Pure) -
Probabilistic approach for assessing cancer risk due to benzo[a]pyrene in barbecued meat: Informing advice for population groups
Jakobsen, L. S., Georgiadis, S., Nielsen, B. F., Bokkers, B. G. H., Boriani, E., Duedahl-Olesen, L., Hald, T., Nauta, M. J., Stockmarr, A. & Pires, S. M., 2018, In: PLOS ONE. 13, 11, 20 p., e0207032.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile439 Downloads (Pure) -
Source Attribution and Risk Assessment of Antimicrobial Resistance
Pires, S. M., Riberio Duarte, A. S. & Hald, T., 2018, In: Microbiology Spectrum. 6, 3, 17 p., ARBA-0027-2017.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile405 Downloads (Pure) -
Trends and sources in human salmonellosis
Munck, N. S. M., Njage, P. M. K., Litrup, E. & Hald, T., 2018, Annual Report on Zoonoses in Denmark 2017. Helwigh, B. & Müller, L. (eds.). Kgs. Lyngby: Technical University of Denmark, p. 6-8 (Annual Report on Zoonoses in Denmark).Research output: Chapter in Book/Report/Conference proceeding › Report chapter › Research › peer-review
Open AccessFile541 Downloads (Pure)