Research Output per year
Research Output
2019
Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage
Hendriksen, R. S., Munk, P., Njage, P. M. K., van Bunnik, B., McNally, L., Lukjancenko, O., Röder, T., Nieuwenhuijse, D., Karlsmose Pedersen, S., Kjeldgaard, J. S., Kaas, R. S., Clausen, P. T. L. C., Vogt, J. K., Leekitcharoenphon, P., van de Schans, M. G. M., Zuidema, T., de Roda Husman, A. M., Rasmussen, S., Petersen, B., Global, S. S. P. C. & 14 others, , 2019, In : Nature Communications. 10, 12 p., 1124.Research output: Contribution to journal › Journal article › Research › peer-review
Open Access
File
Proficiency testing of virus diagnostics based on bioinformatics analysis of simulated in silico high-throughput sequencing datasets
Brinkmann, A., Andrusch, A., Belka, A., Wylezich, C., Höper, D., Pohlmann, A., Petersen, T. N., Lucas, P., Blanchard, Y., Papa, A., Melidou, A., Oude Munnink, B. B., Matthijnssens, J., Deboutte, W., Ellis, R. J., Hansmann, F., Baumgärtner, W., van der Vries, E., Osterhaus, A., Camma, C. & 16 others, , 2019, In : Journal of Clinical Microbiology. 57, 8, 12 p., e00466-19.Research output: Contribution to journal › Journal article › Research › peer-review
Open Access
File
SignalP 5.0 improves signal peptide predictions using deep neural networks
Almagro Armenteros, J. J., Tsirigos, K. D., Sønderby, C. K., Petersen, T. N., Winther, O., Brunak, S., von Heijne, G. & Nielsen, H., 2019, In : Nature Biotechnology. 37, p. 420-423Research output: Contribution to journal › Journal article › Research › peer-review
Open Access
File
2018
Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries
Munk, P., Knudsen, B. E., Lukjacenko, O., Duarte, A. S. R., Van Gompel, L., Luiken, R. E. C., Smit, L. A. M., Schmitt, H., Garcia, A. D., Hansen, R. B., Petersen, T. N., Bossers, A., Ruppé, E., Graveland, H., van Essen, A., Gonzalez-Zorn, B., Moyano, G., Sanders, P., Chauvin, C., David, J. & 21 others, , 1 Aug 2018, In : Nature Microbiology. 3, 8, p. 898-908Research output: Contribution to journal › Journal article › Research › peer-review
Open Access
File
2017
MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads
Petersen, T. N., Lukjancenko, O., Thomsen, M. C. F., Sperotto, M. M., Lund, O., Aarestrup, F. M. & Sicheritz-Pontén, T., 2017, In : P L o S One. 12, 5, 13 p., e0176469.Research output: Contribution to journal › Journal article › Research › peer-review
Open Access
File
Norgal: Extraction and de novo assembly of mitochondrial DNA from whole-genome sequencing data
Al-Nakeeb, K. A. A., Petersen, T. N. & Sicheritz-Pontén, T., 2017, In : B M C Bioinformatics. 18, 1, 7 p., 510.Research output: Contribution to journal › Journal article › Research › peer-review
Open Access
File
Protein features as determinants of wild-type glycoside hydrolase thermostability
Geertz-Hansen, H. M., Kiemer, L., Nielsen, M., Stanchev, K., Blom, N., Brunak, S. & Petersen, T. N., 2017, In : Proteins: Structure, Function, and Bioinformatics. 85, 11, p. 2036-2044Research output: Contribution to journal › Journal article › Research › peer-review
Open Access
File
2015
Meta-genomic analysis of toilet waste from long distance flights; a step towards global surveillance of infectious diseases and antimicrobial resistance
Petersen, T. N., Rasmussen, S., Hasman, H., Carøe, C., Bælum, J., Schultz, A. C., Bergmark, L., Svendsen, C. A., Lund, O., Sicheritz-Pontén, T. & Aarestrup, F. M., 2015, In : Scientific Reports. 5, 9 p., 11444.Research output: Contribution to journal › Journal article › Research › peer-review
Open Access
File
2014
Cofactory: Sequence-based prediction of cofactor specificity of Rossmann folds
Geertz-Hansen, H. M., Blom, N., Feist, A., Brunak, S. & Petersen, T. N., 2014, In : Proteins: Structure, Function, and Bioinformatics. 82, 9, p. 1819-1828Research output: Contribution to journal › Journal article › Research › peer-review
Compass: A hybrid method for clinical and biobank data mining
Krysiak-Baltyn, K., Petersen, T. N., Audouze, K. M. L., Jørgensen, N., Ängquist, L. & Brunak, S., 2014, In : Journal of Biomedical Informatics. 47, p. 160-170Research output: Contribution to journal › Journal article › Research › peer-review
2013
Prediction of Disease Causing Non-Synonymous SNPs by the Artificial Neural Network Predictor NetDiseaseSNP.
Johansen, M. B., Gonzalez-Izarzugaza, J. M., Brunak, S., Petersen, T. N. & Gupta, R., 2013, In : PloS one.. 8, 7, e68370.Research output: Contribution to journal › Journal article › Research › peer-review
Open Access
File
2011
A Systematic Study of Site-specific GalNAc-type O-Glycosylation Modulating Proprotein Convertase Processing
Schjoldager, K. T-B. G., Vester-Christensen, M. B., Goth, C. K., Petersen, T. N., Brunak, S., Bennett, E. P., Levery, S. B. & Clausen, H., 2011, In : Journal of Biological Chemistry. 286, 46, p. 40122-40132Research output: Contribution to journal › Journal article › Research › peer-review
2010
CPHmodels-3.0--remote homology modeling using structure-guided sequence profiles
Nielsen, M., Lundegaard, C., Lund, O. & Petersen, T. N., 2010, In : Nucleic Acids Research. 38, p. W576-W581Research output: Contribution to journal › Journal article › Research › peer-review
Open Access
File
NetTurnP – Neural Network Prediction of Beta-turns by Use of Evolutionary Information and Predicted Protein Sequence Features
Petersen, B., Lundegaard, C. & Petersen, T. N., 2010, In : P L o S One. 5, 11Research output: Contribution to journal › Journal article › Research › peer-review
Open Access
File
2009
A generic method for assignment of reliability scores applied to solvent accessibility predictions
Petersen, B., Petersen, T. N., Andersen, P., Nielsen, M. & Lundegaard, C., 2009, In : BMC Structural Biology. 9, p. 51Research output: Contribution to journal › Journal article › Research › peer-review
Open Access
File
2007
Midbrain expression of Delta-like 1 homologue is regulated by GDNF and is associated with dopaminergic differentiation
Christophersen, N. S., Gronborg, M., Petersen, T. N., Fjord-Larsen, L., Jorgensen, J. R., Juliusson, B., Blom, N., Rosenblad, C. & Brundin, P., 2007, In : Experimental neurology. 2, p. 791-801Research output: Contribution to journal › Journal article › Research › peer-review
2006
Identification of novel genes regulated in the developing human ventral mesencephalon
Jørgensen, JR., Juliusson, B., Henriksen, KF., Hansen, C., Knudsen, S., Petersen, T. N., Blom, N., Seiger, A. & Wahlberg, LU., 2006, In : Experimental neurology. 198, 2, p. 427-437Research output: Contribution to journal › Journal article › Research › peer-review