Research output per year
Research output per year
Personal profile
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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ARGprofiler—a pipeline for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets
Martiny, H.-M., Pyrounakis, N., Petersen, T. N., Lukjančenko, O., Aarestrup, F. M., Clausen, P. T. L. C. & Munk, P., 2024, In: Bioinformatics. 40, 3, 8 p., btae086.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile64 Downloads (Orbit) -
Metagenomic analysis of sewage for surveillance of bacterial pathogens: A release experiment to determine sensitivity
Kohle, S., Petersen, T. N., Vigre, H., Johansson, M. H. K. & Aarestrup, F. M., 2024, In: PLOS ONE. 19, 5, 12 p., e0300733.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile61 Downloads (Orbit) -
The European livestock resistome
Munk, P., Yang, D., Röder, T., Maier, L., Petersen, T. N., Duarte, A. S. R., Clausen, P. T. L. C., Brinch, C., Van Gompel, L., Luiken, R., Wagenaar, J. A., Schmitt, H., Heederik, D. J. J., Mevius, D. J., Smit, L. A. M., EFFORT consortium, Bosser, A. & Aarestrup, F. M., 2024, In: mSystems. 9, 4, 20 p., e0132823.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile237 Downloads (Orbit) -
Utilizing co-abundances of antimicrobial resistance genes to identify potential co-selection in the resistome
Martiny, H.-M., Munk, P., Brinch, C., Aarestrup, F. M., Calle, M. L. & Petersen, T. N., 2024, In: Microbiology Spectrum. 12, 7, e0410823.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile31 Downloads (Orbit) -
Antimicrobial resistance monitoring in the Danish swine production by phenotypic methods and metagenomics from 1999 to 2018
Duarte, A. S. R., Marques, A. R., Andersen, V. D., Korsgaard, H. B., Mordhorst, H., Møller, F. D., Petersen, T. N., Vigre, H., Hald, T. & Aarestrup, F. M., 2023, In: Eurosurveillance. 28, 20, 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile69 Downloads (Orbit)
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Applying NGS in the epidemiology of foodborne infections
Thystrup, C. A. N. (PhD Student), Hald, T. (Main Supervisor), Njage, P. M. K. (Supervisor), Petersen, T. N. (Supervisor), Pires, S. M. (Supervisor), Fevre, E. (Examiner) & Hasman, H. (Examiner)
01/08/2022 → 31/07/2025
Project: PhD
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Early warning for disease: improving aquaculturemonitoring with real-time microbiome sequencing
Zarantonello, G. (PhD Student), Cuenca, A. (Main Supervisor), Madsen, L. (Supervisor) & Petersen, T. N. (Supervisor)
01/07/2022 → 31/10/2025
Project: PhD
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Analysis of global emergence and spread of antimicrobial resistance in 150k host and environmental samples
Martiny, H.-M. (PhD Student), Estibaritz, A. A. (Examiner), Friedman, J. (Examiner), Petersen, T. N. (Main Supervisor), Brinch, C. (Supervisor) & Munk, P. (Supervisor)
15/11/2019 → 01/03/2023
Project: PhD
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Importance of mobile elements for global transmission of antimicrobial resistance
Johansson, M. H. K. (PhD Student), Petersen, T. N. (Main Supervisor), Aarestrup, F. M. (Supervisor), Hasman, H. (Examiner) & Kristiansson, E. (Examiner)
01/10/2018 → 10/06/2024
Project: PhD
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Fast-tracking the identification of safe and effective probiotic bacteria by in sillico prediction of bacterial genomic features
Tang Karlsen, S. (PhD Student), Bælum, J. (Supervisor), Vesth, T. C. (Supervisor), Petersen, T. N. (Examiner), Lagesen, K. (Examiner), Tolstrup, N. (Examiner) & Lund, O. (Main Supervisor)
01/08/2017 → 20/05/2021
Project: PhD
Datasets
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PanRes - Collection of antimicrobial resistance genes
Martiny, H.-M. (Creator), Pyrounakis, N. (Creator), Lukjančenko, O. (Creator), Petersen, T. N. (Creator), Aarestrup, F. M. (Creator), Clausen, P. T. L. C. (Creator) & Munk, P. (Creator), Zenodo, 27 Nov 2023
DOI: 10.5281/zenodo.10091602, https://zenodo.org10091602
Dataset
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MetalResistance - Collection of metal resistance genes
Martiny, H.-M. (Creator), Pyrounakis, N. (Creator), Lukjančenko, O. (Creator), Petersen, T. N. (Creator), Aarestrup, F. M. (Creator), Clausen, P. T. L. C. (Creator) & Munk, P. (Creator), Zenodo, 31 Aug 2023
DOI: 10.5281/zenodo.8108201, https://zenodo.org/record/8108201
Dataset