20172020

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Journal article
2020

Metaphylogenetic analysis of global sewage reveals that bacterial strains associated with human disease show less degree of geographic clustering

Ahrenfeldt, J., Waisi, M., Loft, I. C., Clausen, P. T. L. C., Allesøe, R. L., Szarvas, J., Hendriksen, R. S., Aarestrup, F. M. & Lund, O., 2020, In : Scientific Reports. 10, 11 p., 3033.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
40 Downloads (Pure)
2019

Immunity and mental illness: findings from a Danish population-based immunogenetic study of seven psychiatric and neurodevelopmental disorders

Nudel, R., Benros, M. E., Krebs, M. D., Allesøe, R. L., Lemvigh, C. K., Bybjerg-Grauholm, J., Børglum, A. D., Daly, M. J., Nordentoft, M., Mors, O., Hougaard, D. M., Mortensen, P. B., Buil, A., Werge, T., Rasmussen, S. & Thompson, W. K., 2019, In : European journal of human genetics. 27, p. 1445–1455

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
121 Downloads (Pure)

RNase H-dependent PCR-enabled T-cell receptor sequencing for highly specific and efficient targeted sequencing of T-cell receptor mRNA for single-cell and repertoire analysis

Li, S., Sun, J., Allesøe, R. L., Datta, K., Bao, Y., Oliveira, G., Forman, J., Jin, R., Olsen, L. R., Keskin, D. B., Shukla, S. A., Wu, C. J. & Livak, K. J., 2019, In : Nature protocols. 14, p. 2571-2594

Research output: Contribution to journalJournal articleResearchpeer-review

2018

CHTyper, a Web Tool for Subtyping of Extraintestinal Pathogenic Escherichia coli based on the fumC and fimH Alleles

Roer, L., Johannesen, T. B., Hansen, F., Stegger, M., Tchesnokova, V., Sokurenko, E., Garibay, N., Allesøe, R. L., Thomsen, M. C. F., Lund, O., Hasman, H. & Hammerum, A. M., 2018, In : Journal of Clinical Microbiology. 56, 4, 7 p., e00063.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
290 Downloads (Pure)

Direct whole-genome sequencing of Plasmodium falciparum specimens from dried erythrocyte spots

Nag, S., Kofoed, P. E., Ursing, J., Lemvigh, C. K., Allesøe, R. L., Rodrigues, A., Svendsen, C. A., Jensen, J. D., Alifrangis, M., Lund, O. & Møller Aarestrup, F., 23 Feb 2018, In : Malaria Journal. 17, 1, 8 p., 91.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
287 Downloads (Pure)

SCCmecFinder, a Web-Based Tool for Typing of Staphylococcal Cassette Chromosome mec in Staphylococcus aureus Using Whole-Genome Sequence Data

Kaya, H., Hasman, H., Larsen, J., Stegger, M., Johannesen, T. B., Allesøe, R. L., Lemvigh, C. K., Aarestrup, F. M., Lund, O. & Larsen, A. R., 2018, In : mSphere. 3, 1, 9 p., e00612-17.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
307 Downloads (Pure)
2017

Development of a web tool for Escherichia coli subtyping based on fimH alleles: Running title: Development of E. coli fimH sub-typing web-tool

Roer, L., Tchesnokova, V., Allesøe, R. L., Muradova, M., Chattopadhyay, S., Ahrenfeldt, J., Thomsen, M. C. F., Lund, O., Hansen, F., Hammerum, A. M., Sokurenko, E. & Hasman, H., 2017, In : Journal of Clinical Microbiology. 55, 8, p. 2538-2543

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
253 Downloads (Pure)

PointFinder: a novel web tool for WGS-based detection of antimicrobial resistance associated with chromosomal point mutations in bacterial pathogens

Zankari, E., Allesøe, R. L., Joensen, K. G., Cavaco, L., Lund, O. & Aarestrup, F. M., 2017, In : Journal of Antimicrobial Chemotherapy. 72, 10, p. 2764-2768 5 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
358 Downloads (Pure)