Rene S. Hendriksen

2023

A global genomic analysis of Salmonella Concord reveals lineages with high antimicrobial resistance in Ethiopia

Cuypers, W. L., Meysman, P., Weill, F-X., Hendriksen, R. S., Beyene, G., Wain, J., Nair, S., Chattaway, M. A., Perez-Sepulveda, B. M., Ceyssens, P-J., de Block, T., Lee, W. W. Y., Pardos de la Gandara, M., Kornschober, C., Moran-Gilad, J., Veldman, K. T., Cormican, M., Torpdahl, M., Fields, P. I., Černý, T., & 9 othersHardy, L., Tack, B., Mellor, K. C., Thomson, N., Dougan, G., Deborggraeve, S., Jacobs, J., Laukens, K. & Van Puyvelde, S., 2023, In: Nature Communications. 14, 1, 12 p., 3517.

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Antibiotic Profiles and Draft Genome Sequences of Kerstersia gyiorum, Providencia stuartii, Providencia vermicola, and Alcaligenes faecalis Strains Recovered from Soft Tissue Biopsy Samples in Ghana

Egyir, B., Owusu, F., Owusu-Nyantakyi, C., Amuasi, G. R., Boateng, W., Kodom, S., Mohktar, Q., Nilsson, P., Adu, B. & Hendriksen, R. S., 2023, In: Microbiology Resource Announcements. 12, 1, 3 p., e0089322.

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Determination of antimicrobial use in commercial poultry farms in Plateau and Oyo States, Nigeria

Ndahi, M. D., Hendriksen, R., Helwigh, B., Card, R. M., Fagbamila, I. O., Abiodun-Adewusi, O. O., Ekeng, E., Adetunji, V., Adebiyi, I. & Andersen, J. K., 2023, In: Antimicrobial Resistance and Infection Control. 12, 1, 9 p., 30.

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European Union Reference Laboratories support the National food, feed and veterinary Reference Laboratories with rolling out whole genome sequencing in Europe

Michelacci, V., Asséré, A., Cacciò, S., Cavaiuolo, M., Mooijman, K., Morabito, S., Pedersen, S. K., Sayeb, M., Segerman, B., Simonsson, M., Skarin, H., Tozzoli, R., van Hoek, A. & Hendriksen, R. S., 2023, In: Microbial Genomics. 9, 7, 5 p.

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Evaluation and validation of laboratory procedures for the surveillance of ESBL-, AmpC-, and carbapenemase-producing Escherichia coli from fresh meat and caecal samples

Hendriksen, R. S., Cavaco, L. M., Guerra, B., Bortolaia, V., Agersø, Y., Svendsen, C. A., Nielsen, H. N., Kjeldgaard, J. S., Pedersen, S. K., Fertner, M. & Hasman, H., 2023, In: Frontiers in Microbiology. 14, 15 p., 1229542.

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Evidence review and recommendations for the implementation of genomics for antimicrobial resistance surveillance: reports from an international expert group

SEDRIC Genomics Surveillance Working Group, Baker, K. S., Jauneikaite, E., Nunn, J. G., Midega, J. T., Atun, R., Holt, K. E., Walia, K., Howden, B. P., Tate, H., Okeke, I. N., Carattoli, A., Hsu, L. Y., Hopkins, K. L., Muloi, D. M., Wheele, N. E., Aanensen, D. M., Mason, L. C. E., Rodgus, J., Hendriksen, R. S., & 8 othersEssack, S. Y., Egyir, B., Halpin, A. L., MacCannell, D. R., Campos, J., Srikantiah, P., Feasey, N. A. & Peacock, S. J., 2023, (Accepted/In press) In: The Lancet Microbe.

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First Report and Characterization of the mcr-1 Positive Multidrug-Resistant Escherichia coli Strain Isolated from Pigs in Croatia

Kompes, G., Duvnjak, S., Reil, I., Hendriksen, R. S., Sørensen, L. H., Zdelar-Tuk, M., Habrun, B., Cvetnić, L., Bagarić, A. & Špičić, S., 2023, In: Microorganisms. 11, 10, 18 p., 2442.

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Genomics for public health and international surveillance of antimicrobial resistance

SEDRIC Genomics Surveillance Working Group, Baker, K. S., Jauneikaite, E., Hopkins, K. L., Lo, S. W., Sánchez-Busó, L., Getino, M., Howden, B. P., Holt, K. E., Musila, L. A., Hendriksen, R. S., Amoako, D. G., Aanensen, D. M., Okeke, I. N., Egyir, B., Nunn, J. G., Midega, J. T., Feasey, N. A. & Peacock, S. J., 2023, (Accepted/In press) In: The Lancet Microbe.

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Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Salmonella Typhi genomes

Carey, M. E., Dyson, Z. A., Ingle, D. J., Amir, A., Aworh, M. K., Chattaway, M. A., Chew, K. L., Crump, J. A., Feasey, N. A., Howden, B. P., Keddy, K. H., Maes, M., Parry, C. M., Van Puyvelde, S., Webb, H. E., Afolayan, A. O., Alexander, A. P., Anandan, S., Andrews, J. R., Ashton, P. M., & 95 othersBasnyat, B., Bavdekar, A., Bogoch, I. I., Clemens, J. D., da Silva, K. E., De, A., de Ligt, J., Diaz Guevara, P. L., Dolecek, C., Dutta, S., Ehlers, M. M., Francois Watkins, L., Garrett, D. O., Godbole, G., Gordon, M. A., Greenhill, A. R., Griffin, C., Gupta, M., Hendriksen, R. S., Heyderman, R. S., Hooda, Y., Hormazabal, J. C., Ikhimiukor, O. O., Iqbal, J., Jacob, J. J., Jenkins, C., Jinka, D. R., John, J., Kang, G., Kanteh, A., Kapil, A., Karkey, A., Kariuki, S., Kingsley, R. A., Koshy, R. M., Lauer, AC., Levine, M. M., Lingegowda, R. K., Luby, S. P., Mackenzie, G. A., Mashe, T., Msefula, C., Mutreja, A., Nagaraj, G., Nagaraj, S., Nair, S., Naseri, T. K., Nimarota-Brown, S., Njamkepo, E., Okeke, I. N., Perumal, S. P. B., Pollard, A. J., Pragasam, A. K., Qadri, F., Qamar, F. N., Rahman, S. I. A., Rambocus, S. D., Rasko, D. A., Ray, P., Robins-Browne, R., Rongsen-Chandola, T., Rutanga, J. P., Saha, S. K., Saha, S., Saigal, K., Sajib, M. S. I., Seidman, J. C., Shakya, J., Shamanna, V., Shastri, J., Shrestha, R., Sia, S., Sikorski, M. J., Singh, A., Smith, A. M., Tagg, K. A., Tamrakar, D., Tanmoy, A. M., Thomas, M., Thomas, M. S., Thomsen, R., Thomson, N. R., Tupua, S., Vaidya, K., Valcanis, M., Veeraraghavan, B., Weill, F-X., Wright, J., Dougan, G., Argimón, S., Keane, J. A., Aanensen, D. M., Baker, S., Holt, K. E. & Global Typhoid Genomics Consortium Group Authorship, 2023, In: eLife. 12, 46 p., e85867.

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One Health surveillance-A cross-sectoral detection, characterization, and notification of foodborne pathogens

Lahti, E. T., Karamehmedovic, N., Riedel, H., Blom, L., Boel, J., Delibato, E., Denis, M., van Essen-Zandbergen, A., Garcia-Fernandez, A., Hendriksen, R., Heydecke, A., van Hoek, A. H. A. M., Huby, T., Kwit, R., Lucarelli, C., Lundin, K., Michelacci, V., Owczarek, S., Ring, I., Kjeldgaard, J. S., & 8 othersSjögren, I., Skóra, M., Torpdahl, M., Ugarte-Ruiz, M., Veldman, K., Ventola, E., Zajac, M. & Jernberg, C., 2023, In: Frontiers in Public Health. 11, 12 p., 1129083.

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Phenotypic and genotypic characteristics of Beta-lactamase dominant with CARBA, AmpC, and ESBL-producing bacteria in municipal wastewater influent in Helsinki, Finland

Tiwari, A., Paakkanen, J., Al-Mustapha, A. I., Kirveskari, J., Hendriksen, R. S. & Heikinheimo, A., 2023, In: Journal of Global Antimicrobial Resistance. 33, p. 345-352 8 p.

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Quinolone-resistant Escherichia coli at the interface between humans, poultry and their shared environment- a potential public health risk

Aworh, M. K., Kwaga, J. K. P., Hendriksen, R. S., Okolocha, E. C., Harrell, E. & Thakur, S., 2023, In: One Health Outlook. 5, 1, 16 p., 2.

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Results of the 2020 Genomic Proficiency Test for the network of European Union Reference Laboratory for Antimicrobial Resistance assessing whole-genome-sequencing capacities

Kristensen, T., Sørensen, L. H., Pedersen, S. K., Jensen, J. D., Mordhorst, H., Lacy-Roberts, N., Lukjancenko, O., Luo, Y., Hoffmann, M. & Hendriksen, R. S., 2023, In: Microbial Genomics. 9, 8, 13 p., 001076.

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Whole genomes from bacteria collected at diagnostic units around the world 2020

Nag, S., Larsen, G., Szarvas, J., Birkedahl, L. E. K., Gulyás, G. M., Ciok, W. J., Lagermann, T. M., Tafaj, S., Bradbury, S., Collignon, P., Daley, D., Dougnon, V., Fabiyi, K., Coulibaly, B., Dembélé, R., Nikiema, G., Magloire, N., Ouindgueta, I. J., Hossain, Z. Z., Begum, A., & 58 othersDonchev, D., Diggle, M., Turnbull, L., Lévesque, S., Berlinger, L., Sogaard, K. K., Guevara, P. D., Valderrama, C. D., Maikanti, P., Amlerova, J., Drevinek, P., Tkadlec, J., Dilas, M., Kaasch, A., Westh, H. T., Bachtarzi, M. A., Amhis, W., Salazar, C. E. S., Villacis, J., Lúzon, M. A. D., Palau, D. B., Duployez, C., Paluche, M., Asante-Sefa, S., Moller, M., Ip, M., Mareković, I., Pál-Sonnevend, A., Cocuzza, C. E., Dambrauskiene, A., Macanze, A., Cossa, A., Mandomando, I., Nwajiobi-Princewill, P., Okeke, I. N., Kehinde, A. O., Adebiyi, I., Akintayo, I., Popoola, O., Onipede, A., Blomfeldt, A., Nyquist, N. E., Bocker, K., Ussher, J., Ali, A., Ullah, N., Khan, H., Gustafson, N. W., Jarrar, I., Al-Hamad, A., Luvira, V., Paveenkittiporn, W., Baran, I., Mwansa, J. C. L., Sikakwa, L., Yamba, K., Hendriksen, R. S. & Aarestrup, F. M., 2023, In: Scientific Data. 10, 1, 10 p., 628.

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2022

Draft Genome Sequences of Six Isolates of the Bacillus cereus Group Isolated from Pet Reptiles

Skóra, M., Zając, M., Kwit, R., Skarżyńska, M., Pasim, P., Mikos-Wojewoda, E., Bomba, A., Giza, A., Chesneau, O., Hendriksen, R. S. & Wasyl, D., 2022, In: Microbiology Resource Announcements. 11, 9, 3 p.

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Extended-Spectrum ß-Lactamase-Producing Escherichia coli Among Humans, Beef Cattle, and Abattoir Environments in Nigeria

Aworh, M. K., Ekeng, E., Nilsson, P., Egyir, B., Owusu-Nyantakyi, C. & Hendriksen, R. S., 2022, In: Frontiers in Cellular and Infection Microbiology. 12, 11 p., 869314.

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Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance

Munk, P., Brinch, C., Møller, F. D., Petersen, T. N., Hendriksen, R. S., Seyfarth, A. M., Kjeldgaard, J. S., Svendsen, C. A., van Bunnik, B., Berglund, F., Global, S. S. C., Larsson, D. G. J., Koopmans, M., Woolhouse, M. & Aarestrup, F. M., 2022, In: Nature Communications. 13, 1, 16 p., 7251.

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Molecular characterization of circulating Salmonella Typhi strains in an urban informal settlement in Kenya

Ochieng, C., Chen, J. C., Osita, M. P., Katz, L. S., Griswold, T., Omballa, V., Ng'eno, E., Ouma, A., Wamola, N., Opiyo, C., Achieng, L., Munywoki, P. K., Hendriksen, R. S., Freeman, M., Mikoleit, M., Juma, B., Bigogo, G., Mintz, E., Verani, J. R., Hunsperger, E., & 1 othersCarleton, H. A., 2022, In: PLOS Neglected Tropical Diseases . 16, 8, 15 p., e0010704.

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Rapid risk assessment framework to assess public health risk of antimicrobial resistance found in foods

Korsgaard, H., Hendriksen, R. S. & Ellis-Iversen, J., 2022, In: Food Control. 137, 8 p., 108852.

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Wastewater Surveillance Detected Carbapenemase Enzymes in Clinically Relevant Gram-Negative Bacteria in Helsinki, Finland; 2011-2012

Tiwari, A., Paakkanen, J., Österblad, M., Kirveskari, J., Hendriksen, R. S. & Heikinheimo, A., 2022, In: Frontiers in Microbiology. 13, 9 p., 887888.

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2021

Antimicrobial and Genomic Characterization of Salmonella Nigeria from Pigs and Poultry in Ilorin, North-central, Nigeria

Raufu, I. A., Ahmed, O. A., Aremu, A., Ameh, J. A., Timme, R. E., Hendriksen, R. S. & Ambali, A., 2021, In: Journal of Infection in Developing Countries. 15, 12, p. 1899-1909 11 p.

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Co-localization of carbapenem (bla_OXA-162) and colistin (mcr-1) resistance genes on a transferable IncHI2 plasmid in Escherichia coli of chicken origin

Bortolaia, V., Ronco, T., Romascu, L., Nicorescu, I., Milita, N. M., Vaduva, A. M., Leekitcharoenphon, P., Kjeldgaard, J. S., Hansen, I. M., Svendsen, C. A., Mordhorst, H., Guerra, B., Beloeil, P-A., Hoffmann, M. & Hendriksen, R. S., 2021, In: Journal of Antimicrobial Chemotherapy. 76, 11, p. 3063-3065 3 p., dkab285.

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Emergence and Clonal Spread of CTX-M-65-Producing Escherichia coli From Retail Meat in Portugal

Leão, C., Clemente, L., Moura, L., Seyfarth, A. M., Hansen, I. M., Hendriksen, R. S. & Amaro, A., 2021, In: Frontiers in Microbiology. 12, 11 p., 653595.

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Fluoroquinolone esistant Escherichia coli recovered at the interface between humans, poultry and their shared environment - a potential public health risk

Aworh, MK., Kwaga, JK., Hendriksen, RS., Okolocha, EC., Ihekweazu, C. & Thakur, S., 2021, In: American Journal of Tropical Medicine and Hygiene. 105, 5, p. 436-437 2 p.

Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

Genetic relatedness of multidrug resistant Escherichia coli isolated from humans, chickens and poultry environments

Aworh, M. K., Kwaga, J. K. P., Hendriksen, R. S., Okolocha, E. C. & Thakur, S., 2021, In: Antimicrobial Resistance and Infection Control. 10, 1, 13 p., 58.

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Impact of the COVID-19 pandemic on the surveillance, prevention and control of antimicrobial resistance: A global survey

Tomczyk, S., Taylor, A., Brown, A., de Kraker, M. E. A., El-Saed, A., Alshamrani, M., Hendriksen, R. S., Jacob, M., Löfmark, S., Perovic, O., Shetty, N., Sievert, D., Smith, R., Stelling, J., Thakur, S., Vietor, A. C. & Eckmanns, T., 2021, In: Journal of Antimicrobial Chemotherapy. 76, p. 3045–3058 14 p.

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Mapping the coverage, availability and uptake of External Quality Assessment programmes across One Health sectors in Asia

Mogeni, O. D., Abegaz, F. A., Kim, J-H., Joh, H. S., Kastbjerg, V. G., Pedersen, S. K., Hendriksen, R. S. & Holm, M., 2021, In: Journal of Antimicrobial Chemotherapy. 8 p.

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New Brucella variant isolated from Croatian cattle

Spicic, S., Zdelar-Tuk, M., Ponsart, C., Hendriksen, R. S., Reil, I., Girault, G., Leekitcharoenphon, P., Rukavina, V., Rubin, M., Freddi, L. & Duvnjak, S., 2021, In: BMC Veterinary Research. 17, 1, 5 p., 126.

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Occurrence, antimicrobial resistance and whole genome sequence analysis of Salmonella Serovars from pig farms in Ilorin, north-Central Nigeria

Raufu, I. A., Ahmed, O. A., Aremu, A., Ameh, J. A., Timme, R. E., Hendriksen, R. S. & Ambali, A. G., 2021, In: International Journal of Food Microbiology. 350, 109245.

Research output: Contribution to journal › Journal article › Research › peer-review

Phenotypic and genotypic characterization of mcr-1-positive multidrug-resistant Escherichia coli ST93, ST117, ST156, ST10, and ST744 isolated from poultry in Poland

Ćwiek, K., Woźniak-Biel, A., Karwańska, M., Siedlecka, M., Lammens, C., Bastos Rebelo, A. R., Hendriksen, R. S., Kuczkowski, M., Chmielewska-Władyka, M. & Wieliczko, A., 2021, In: Brazilian Journal of Microbiology. 52, p. 1597–1609 13 p.

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Prevalence and risk factors for faecal carriage of multidrug resistant Escherichia coli among slaughterhouse workers

Aworh, M. K., Abiodun-Adewusi, O., Mba, N., Helwigh, B. & Hendriksen, R. S., 2021, In: Scientific Reports. 11, 1, 13362.

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Salmonella enterica serovar Typhi H58 clone has been endemic in Zimbabwe from 2012 to 2019

Mashe, T., Leekitcharoenphon, P., Mtapuri-Zinyowera, S., Kingsley, R. A., Robertson, V., Tarupiwa, A., Kock, M. M., Makombe, E. P., Chaibva, B. V., Manangazira, P., Phiri, I., Nyadundu, S., Chigwena, C. T., Mufoya, L. P., Thilliez, G., Midzi, S., Mwamakamba, L. W., Hamblion, E. L., Matheu, J., Jensen, J. D., & 3 othersAarestrup, F. M., Hendriksen, R. S. & Ehlers, M. M., 2021, In: Journal of Antimicrobial Chemotherapy. 76, 5, p. 1160–1167

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The 26th Proficiency Testing, 2019 – Enterococci, Staphylococci and Escherichia coli

Bortolaia, V., Karlsmose Pedersen, S. & Hendriksen, R. S., 2021, Kgs. Lyngby: Technical University of Denmark. 23 p.

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The 27th Proficiency Testing, 2019 – Salmonella and Campylobacter

Ronco, T., Karlsmose Pedersen, S. & Hendriksen, R. S., 2021, Kgs. Lyngby: Technical University of Denmark. 15 p.

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The 28th EURL-AR Proficiency Test Escherichia coli, Salmonella and Campylobacter 2020

Ronco, T., Karlsmose Pedersen, S. & Hendriksen, R. S., 2021, Kgs. Lyngby: DTU Food. 86 p.

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The 6th EURL-AR PT on Selective Isolation of E. coli with presumptive ESBL or AmpC Phenotypes from Meat or Caecal Samples - 2020

Kjeldgaard, J. S., Karlsmose Pedersen, S. & Hendriksen, R. S., 2021, Kgs. Lyngby: DTU Food. 57 p.

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2020

Accelerating surveillance and research of antimicrobial resistance - an online repository for sharing of antimicrobial susceptibility data associated with whole-genome sequences

Matamoros, S., Hendriksen, R. S., Pataki, B. Á., Pakseresht, N., Rossello, M., Silvester, N., Amid, C., Aarestrup, F. M., Koopmans, M., Cochrane, G., Csabai, I., Lund, O., Schultsz, C. & Group, T. C. M-A., 2020, In: Microbial genomics. 6, 5, 6 p.

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A metagenomic glimpse into the gut of wild and domestic animals: Quantification of antimicrobial resistance and more

Skarżyńska, M., Leekitcharoenphon, P., Hendriksen, R. S., Aarestrup, F. M. & Wasyl, D., 2020, In: PLOS ONE. 15, 12, e0242987.

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DANMAP 2019 - Use of antimicrobial agents and occurrence of antimicrobial resistance in bacteria from food animals, food and humans in Denmark

Korsgaard, H. B., Ellis-Iversen, J., Hendriksen, R. S., Borck Høg, B., Ronco, T., Attauabi, M., Boel, J., Dalby, T., Hammerum, A. M., Hansen, F., Hasman, H., Henius, A. E., Hoffmann, S., Ilan, M. B., Kaya, H., Kjerulf, A., Kristensen, B., Kähler, J., Rhod Larsen, A., Nielsen, E. M., & 9 othersSchytte Olsen, S., Petersen, A., Porsbo, L. J., Roer, L., Skovgaard, S., Slotved, H-C., Wolff Sönksen, U., Torpdahl, M. & Laursen, M., 2020, Kgs. Lyngby: Statens Serum Institut og Technical University of Denmark. 160 p.

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Extended-spectrum ß-lactamase-producing Escherichia coli among humans, chickens and poultry environments in Abuja, Nigeria

Aworh, M. K., Kwaga, J., Okolocha, E., Harden, L., Hull, D., Hendriksen, R. S. & Thakur, S., 2020, In: One health outlook. 2, 11 p., 8.

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Metagenomics-Based Proficiency Test of Smoked Salmon Spiked with a Mock Community

Sala, C., Mordhorst, H., Grützke, J., Brinkmann, A., Petersen, T. N., Poulsen, C. S., Cotter, P. D., Crispie, F., Ellis, R. J., Castellani, G., Amid, C., Hakhverdyan, M., Guyader, S. L., Manfreda, G., Mossong, J., Nitsche, A., Ragimbeau, C., Schaeffer, J., Schlundt, J., Tay, M. Y. F., & 4 othersAarestrup, F. M., Hendriksen, R. S., Pamp, S. J. & De Cesare, A., 2020, In: Microorganisms. 8, 12, 16 p., 1861.

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Metaphylogenetic analysis of global sewage reveals that bacterial strains associated with human disease show less degree of geographic clustering

Ahrenfeldt, J., Waisi, M., Loft, I. C., Clausen, P. T. L. C., Allesøe, R. L., Szarvas, J., Hendriksen, R. S., Aarestrup, F. M. & Lund, O., 2020, In: Scientific Reports. 10, 11 p., 3033.

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Molecular Characteristics and Zoonotic Potential of Salmonella Weltevreden From Cultured Shrimp and Tilapia in Vietnam and China

Hounmanou, Y. M. G., Dalsgaard, A., Sopacua, T. F., Uddin, G. M. N., Leekitcharoenphon, P., Hendriksen, R. S., Olsen, J. E. & Larsen, M. H., 2020, In: Frontiers in Microbiology. 11, 10 p., 1985.

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Molecular epidemiology of Salmonella Infantis in Europe: insights into the success of the bacterial host and its parasitic pESI-like megaplasmid

Alba, P., Leekitcharoenphon, P., Carfora, V., Amoruso, R., Cordaro, G., Di Matteo, P., Ianzano, A., Iurescia, M., Diaconu, E. L., Study Group, E-E-A. N., Karlsmose Pedersen, S., Guerra, B., Hendriksen, R. S., Franco, A. & Battisti, A., 2020, In: Microbial Genomics. 6, 5, 12 p.

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Proficiency Testing of Metagenomics-Based Detection of Food-Borne Pathogens Using a Complex Artificial Sequencing Dataset

Höper, D., Grützke, J., Brinkmann, A., Mossong, J., Matamoros, S., Ellis, R. J., Deneke, C., Tausch, S. H., Cuesta, I., Monzón, S., Juliá, M., Petersen, T. N., Hendriksen, R. S., Pamp, S. J., Leijon, M., Hakhverdyan, M., Walsh, A. M., Cotter, P. D., Chandrasekaran, L., Tay, M. Y. F., & 6 othersSchlundt, J., Sala, C., De Cesare, A., Nitsche, A., Beer, M. & Wylezich, C., 2020, In: Frontiers in Microbiology. 11, 11 p., 575377.

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Quantitative Microbial Risk Assessment Based on Whole Genome Sequencing Data: Case of Listeria monocytogenes

Njage, P. M. K., Leekitcharoenphon, P., Hansen, L. T., Hendriksen, R. S., Faes, C., Aerts, M. & Hald, T., 2020, In: Microorganisms. 8, 11, 24 p., 1772.

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Setting a baseline for global urban virome surveillance in sewage

Nieuwenhuijse, D. F., Oude Munnink, B. B., Phan, M. V. T., the Global Sewage Surveillance project consortium, Munk, P., Venkatakrishnan, S., Aarestrup, F. M., Cotten, M. & P. G. Koopmans, M., 2020, In: Scientific Reports. 10, 1, 13 p., 13748.

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Symposium report: One Health meets sequencing

Egli, A., Koch, D., Danuser, J., Hendriksen, R. S., Driesen, S., Schmid, D. C., Neher, R., Mäusezahl, M., Seth-Smith, H. M., Bloemberg, G., Tschudin-Sutter, S., Endimiani, A., Perreten, V., Greub, G., Schrenzel, J. & Stephan, R., 2020, In: Microbes and Infection. 22, 1, p. 1-7

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The 24th Proficiency Testing, 2018 – Enterococci, staphyloccci and E. coli

Bortolaia, V., Karlsmose Pedersen, S., Hendriksen, R. S. & Aarestrup, F. M., 2020, 2 ed. Kgs. Lyngby: Technical University of Denmark. 112 p.

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Understanding and predicting ciprofloxacin minimum inhibitory concentration in Escherichia coli with machine learning

Pataki, B. Á., Matamoros, S., van der Putten, B. C. L., Remondini, D., Giampieri, E., Aytan-Aktug, D., Hendriksen, R. S., Lund, O., Csabai, I., Schultsz, C. & COMPARE ML-AMR group, SPS., 2020, In: Scientific Reports. 10, 1, 9 p., 15026.

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Rene S. Hendriksen

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