Publications per year
Publications per year
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2023
Benchmarking software tools for trimming adapters and merging next-generation sequencing data for ancient DNA
Lien, A., Legori, L. P., Kraft, L., Sackett, P. W. & Renaud, G., 2023, In: Frontiers in Bioinformatics. 3, 18 p., 1260486.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile41 Downloads (Pure) -
euka: Robust tetrapodic and arthropodic taxa detection from modern and ancient environmental DNA using pangenomic reference graphs
Vogel, N. A., Rubin, J. D., Swartz, M., Vlieghe, J., Sackett, P. W., Pedersen, A. G., Pedersen, M. W. & Renaud, G., 2023, In: Methods in Ecology and Evolution. 14, 11, p. 2717-2727Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile -
HaploCart: Human mtDNA haplogroup classification using a pangenomic reference graph
Rubin, J. D., Vogel, N. A., Gopalakrishnan, S., Sackett, P. W. & Renaud, G., 2023, In: PLOS Computational Biology. 19, 6, 27 p., e1011148.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile17 Downloads (Pure) -
NetAllergen, a random forest model integrating MHC-II presentation propensity for improved allergenicity prediction
Li, Y., Sackett, P. W., Nielsen, M. & Barra, C., 2023, In: Bioinformatics Advances. 3, 1, 10 p., vbad151.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile36 Downloads (Pure) -
RosettaDDGPrediction for high-throughput mutational scans: From stability to binding
Sora, V., Laspiur, A. O., Degn, K., Arnaudi, M., Utichi, M., Beltrame, L., De Menezes, D., Orlandi, M., Stoltze, U. K., Rigina, O., Sackett, P. W., Wadt, K., Schmiegelow, K., Tiberti, M. & Papaleo, E., 2023, In: Protein Science. 32, 1, 25 p., e4527.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile318 Downloads (Pure) -
2020
Nationwide germline whole genome sequencing of 198 consecutive pediatric cancer patients reveals a high frequency of cancer prone syndromes
Byrjalsen, A., Hansen, T. V. O., Stoltze, U. K., Mehrjouy, M. M., Barnkob, N. M., Hjalgrim, L. L., Mathiasen, R., Lautrup, C. K., Gregersen, P. A., Hasle, H., Wehner, P. S., Tuckuviene, R., Sackett, P. W., Laspiur, A. O., Rossing, M., Marvig, R. L., Tommerup, N., Olsen, T. E., Scheie, D. & Gupta, R. & 3 others, , 2020, In: PLOS Genetics. 16, 12, 24 p., e1009231.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile127 Downloads (Pure) -
2009
InterMap3D: predicting and visualizing co-evolving protein residues
Oliveira, R. G., Roque, F. J. S. S. A., Wernersson, R., Sicheritz-Pontén, T., Sackett, P. W., Mølgaard, A. & Pedersen, A. G., 2009, In: Bioinformatics. 25, 15, p. 1963-1965Research output: Contribution to journal › Journal article › Research › peer-review
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2007
MaxAlign: maximizing usable data in an alignment
Oliveira, R. G., Sackett, P. W. & Pedersen, A. G., 2007, In: BMC Bioinformatics. 8, p. 312Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile534 Downloads (Pure) -
2006
FeatureMap3D - a tool to map protein features and sequence conservation onto homologous structures in the PDB
Wernersson, R., Rapacki, K., Stærfeldt, H. H., Sackett, P. W. & Mølgaard, A., 2006, In: Nucleic Acids Research. 34, SI, p. 84-88Research output: Contribution to journal › Journal article › Research › peer-review