19952020

Research output per year

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Research Output

2020

GISA: using Gauss Integrals to identify rare conformations in protein structures

Gronbaek, C., Hamelryck, T. & Røgen, P., 2020, In : PeerJ. 8, 16 p., e9159.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
16 Downloads (Pure)
2015

Protein structure refinement by optimization

Carlsen, M. & Røgen, P., 1 Sep 2015, In : Proteins: Structure, Function and Bioinformatics. 83, 9, p. 1616-1624

Research output: Contribution to journalJournal articleResearchpeer-review

2014

On the importance of the distance measures used to train and test knowledge-based potentials for proteins

Carlsen, M., Koehl, P. & Røgen, P., 2014, In : P L o S One. 9, 11, 18 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
236 Downloads (Pure)
2013

Extracting knowledge from protein structure geometry

Røgen, P. & Koehl, P., 2013, In : Proteins - Structure Function and Bioinformatics. 81, 5, p. 841-851

Research output: Contribution to journalJournal articleResearchpeer-review

2012

Ways to optimize metric properties of protein structure descriptors

Røgen, P., 2012.

Research output: Contribution to conferencePosterResearchpeer-review

Open Access
File
173 Downloads (Pure)
2011

Efficiency of a gyroscopic device for conversion of mechanical wave energy to electrical energy: Technical report from ESGI-83 workshop in industrial mathematics 2011

Carlsen, M., Darula, R., Gravesen, J., Hjorth, P. G., Jørgensen, H. B., Nguyen, D. M., Nielsen, P. N., Olsen, J., Petersen, H. G., Røgen, P. & Ögren, M., 2011, 27 p.

Research output: Book/ReportReportResearchpeer-review

Open Access
File
761 Downloads (Pure)

Fast large-scale clustering of protein structures using Gauss integrals

Harder, T., Borg, M., Boomsma, W., Røgen, P. & Hamelryck, T., 2011, In : Bioinformatics. 28, 4, p. 510-515

Research output: Contribution to journalJournal articleResearchpeer-review

2010

A smooth knowledge based potential for protein structure refinement

Røgen, P. & Koehl, P., 2010.

Research output: Contribution to conferencePosterResearchpeer-review

2009

A 7-mer knowledge-based potential for detecting native protein structures from decoys.

Røgen, P., 2009.

Research output: Contribution to conferencePosterResearchpeer-review

Application of geometric descriptors to protein structures

Røgen, P., 2009.

Research output: Contribution to conferencePaperResearch

A probabilistic approach to protein structure prediction: PHAISTOS in CASP8

Borg, M., Ferkinghoff-Borg, J., Frellsen, J., Harder, T., Mardia, K. V., Røgen, P., Stovgaard, K. & Hamelryck, T., 2009, Proceedings of the 28th Leeds Annual Statistical Research Workshop, Dept. Stat., Univ. Leeds., Jul. 7-9 (2009)..

Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

Keynote: Description, classification and prediction of protein structures

Røgen, P., 2009.

Research output: Contribution to conferencePaperResearch

Some (DC)AMM problems in Computational Structural Biology

Røgen, P., 2009.

Research output: Contribution to conferencePaperResearch

2008

An index formula for the self-linking number of a space curve

Røgen, P., 2008, In : Geometriae Dedicata. 134, 1, p. 197-202

Research output: Contribution to journalJournal articleResearchpeer-review

Parabolic section and distance excess of space curves applied to protein structure classification

Røgen, P. & Karlsson, P. W., 2008, In : Geometriae Dedicata. 134, 1, p. 91-107

Research output: Contribution to journalJournal articleResearchpeer-review

2007

Quantifying the Relative Positions of Proteins Secondary Structure Elements

Røgen, P. & Karlsson, P. W., 2007.

Research output: Contribution to conferencePosterResearchpeer-review

2006

Description and classification of protein structures

Røgen, P., 2006.

Research output: Contribution to conferencePaperResearch

Fra Matematik til ``Bio''-Matematik

Røgen, P., 2006.

Research output: Contribution to conferencePaperResearch

Gauss-Integral based representation of protein structure for predicting fold-class from sequence

Nielsen, B. G., Røgen, P. & Bohr, H., 2006, In : Mathematical and computer modelling. 43, p. 401-412

Research output: Contribution to journalJournal articleResearchpeer-review

Mathematical challenges in description and classification of protein structures

Røgen, P., 2006.

Research output: Contribution to conferencePaperResearchpeer-review

2005

Evaluating protein structure descriptors and tuning Gauss integral based descriptors

Røgen, P., 2005, In : Journal of Physics: Condensed Matter. 17, p. 1523-1538

Research output: Contribution to journalConference articleResearchpeer-review

Geometry in Structural Biology

Røgen, P., 2005.

Research output: Contribution to conferencePaperResearch

On a measure of localized self-parallelity of a space curve

Røgen, P. & Karlsson, P. W., 2005, MAT-report No. 2005 -18 ed. MAT.

Research output: Book/ReportReport

Protein folding and the organization of the protein topology universe

Lindorff-Larsen, K., Røgen, P., Paci, E., Vendruscolo, M. & Dobson, C. M., 2005, In : Trends in Biochemical Sciences. 30, 1, p. 13-19

Research output: Contribution to journalJournal articleResearchpeer-review

2004

De Novo generation of molecular structures using optimization to select graphs on a given lattice

Bywater, R. P., Poulsen, T. A., Røgen, P. & Hjorth, P. G., 2004, In : Journal of chemical information and computer sciences. 44, 3, p. 856-861

Research output: Contribution to journalJournal articleResearchpeer-review

Fold-class prediction -- Using a Gauss-integral based representation of protein structure

Nielsen, B. G., Røgen, P. & Bohr, H., 2004.

Research output: Contribution to conferencePosterResearch

The Geometry of Protein Structures by Numbers

Røgen, P., 2004

Research output: Non-textual formSound/Visual production (digital)Research

The Geometry of Protein Structures by Numbers

Røgen, P., 2004.

Research output: Contribution to conferencePosterResearchpeer-review

2003

A new family of global protein shape descriptors

Røgen, P. & Bohr, H., 2003, In : Mathematical biosciences. 182, 2, p. 167-181

Research output: Contribution to journalJournal articleResearchpeer-review

Automatic classification of protein structure by using Gauss integrals

Røgen, P. & Fain, B., 2003, In : Proceedings of the National Academy of Sciences of the United States of America. 100, 1, p. 119-124

Research output: Contribution to journalJournal articleResearchpeer-review

Computing a new family of shape descriptors for protein structures

Røgen, P. & Sinclair, R., 2003, In : Journal of chemical information and computer sciences. 43, 6, p. 1740-1747

Research output: Contribution to journalJournal articleResearchpeer-review

De nova generation of molecular structures using optimization to select graphs on a given lattice

Bywater, R. P., Poulsen, T. A., Røgen, P. & Hjorth, P. G., 2003

Research output: Book/ReportReportResearch

Scaling laws for protein domain structures: improving Gauss integral based protein

Røgen, P., 2003.

Research output: Contribution to conferencePosterResearchpeer-review

2002

A Family of Global Measures of Protein Structures

Røgen, P., 2002

Research output: Book/ReportReport

Automatic classification of protein structures using Gauss integrals

Røgen, P. & Fain, B., 2002.

Research output: Contribution to conferencePosterResearchpeer-review

Construction of the simplest model to explain complex receptor activation kinetics

Bywater, RP., Sorensen, A., Røgen, P. & Hjorth, P. G., 2002, In : J THEOR BIOL. 218, 2, p. 139-147

Research output: Contribution to journalJournal articleResearchpeer-review

Lattice Generation of Organic Compounds

Baywater, R., Poulsen, T. A., Ahrendt, P., Røgen, P. & Hjorth, P. G., 2002, (European Study Group with Industry Final Report; No. 41).

Research output: Book/ReportReportResearch

On representation of protein backbones with (framed) space curves

Røgen, P. & Bohr, H., 2002, (MAT-Repoer; No. 2002-14).

Research output: Book/ReportReport

2001

Applications of neural network prediction of conformational states for small peptides from spectra and of fold classes

Bohr, H., Røgen, P. & Jalkanen, K. J., Dec 2001, In : Computers & Chemistry. 26, 1, p. 65-77

Research output: Contribution to journalConference articleResearchpeer-review

Boundaries of flat compact surfaces in 3-space

Røgen, P., 2001, In : Annals of Global Analysis and Geometry. 19, 4, p. 377-407

Research output: Contribution to journalJournal articleResearchpeer-review

Classification of Protein structures by Global Geometric Measures

Røgen, P., 2001.

Research output: Contribution to conferencePosterResearchpeer-review

Embedding and knotting of flat surfaces in 3-space

Røgen, P., 2001, In : Commentarii Mathematici Helvetici. 76, 4, p. 589-606

Research output: Contribution to journalJournal articleResearchpeer-review

1999

Boundaries of flat compact surfaces

Røgen, P., 1999, 30 p.

Research output: Book/ReportReport

Embedding and Knotting of Flat Surfaces

Røgen, P., 1999, 16 p.

Research output: Book/ReportReport

Feature Recognition for Automated Sculpture Reproduction

Greene, R., Greene, G., Nielsen, H. B., Markvorsen, S., Røgen, P., Sinclair, R. & Ungstrup, M., 1999, In : ECMI Newsletter. 25, p. 15-18

Research output: Contribution to journalConference articleResearchpeer-review

On density of the Vassiliev invariants

Røgen, P., 1999, In : Journal of Knot Theory and its Ramifications. 8, 2, p. 249-252

Research output: Contribution to journalJournal articleResearchpeer-review

Principal normal indicatrices of closed space curves

Røgen, P., 1999, In : Geometriae Dedicata. 74, 1, p. 49-60

Research output: Contribution to journalJournal articleResearchpeer-review

1998

Gauss-Bonnet's Formula and Closed Frenet Frames

Røgen, P., 1998, In : Geometriae Dedicata. 73, 3, p. 295-315

Research output: Contribution to journalJournal articleResearchpeer-review