• Kemitorvet, 204, 107

    2800 Kgs. Lyngby

    Denmark

20132022
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Research Output 2016 2020

  • 11 Journal article
  • 1 Conference abstract in journal
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Journal article
2020
44 Downloads (Pure)

Predicting effects of changed antimicrobial usage on the abundance of antimicrobial resistance genes in finisher’ gut microbiomes

Dalhoff Andersen, V., Møller Aarestrup, F., Munk, P., Stengaard Jensen, M., de Knegt, L., Bortolaia, V., nudsen, B. E., Lukjancenko, O., Birkegård, A. C. & Vigre, H., 2020, In : Preventive Veterinary Medicine. 174, 10 p., 104853.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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2019
60 Downloads (Pure)

Associations between antimicrobial use and the faecal resistome on broiler farms from nine European countries

Luiken, R. E. C., Van Gompel, L., Munk, P., Sarrazin, S., Joosten, P., Dorado-García, A., Borup Hansen, R., Knudsen, B. E., Bossers, A., Wagenaar, J. A., Aarestrup, F. M., Dewulf, J., Mevius, D. J., Heederik, D. J. J., Smit, L. A. M., Schmitt, H. & consortium, EFFORT., 2019, In : Journal of Antimicrobial Chemotherapy. 74, 9, p. 2596–2604

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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285 Downloads (Pure)

Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage

Hendriksen, R. S., Munk, P., Njage, P. M. K., van Bunnik, B., McNally, L., Lukjancenko, O., Röder, T., Nieuwenhuijse, D., Karlsmose Pedersen, S., Kjeldgaard, J. S., Kaas, R. S., Clausen, P. T. L. C., Vogt, J. K., Leekitcharoenphon, P., van de Schans, M. G. M., Zuidema, T., de Roda Husman, A. M., Rasmussen, S., Petersen, B., Global, S. S. P. C. & 14 others, Amid, C., Cochrane, G., Sicheritz-Pontén, T., Schmitt, H., Alvarez, J. R. M., Aidara-Kane, A., Pamp, S. J., Lund, O., Hald, T., Woolhouse, M., Koopmans, M. P., Vigre, H., Petersen, T. N. & Aarestrup, F. M., 2019, In : Nature Communications. 10, 12 p., 1124.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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141 Downloads (Pure)

Megaphages infect Prevotella and variants are widespread in gut microbiomes

Devoto, A. E., Santini, J. M., Olm, M. R., Anantharaman, K., Munk, P., Tung, J., Archie, E. A., Turnbaugh, P. J., Seed, K. D., Blekhman, R., Møller Aarestrup, F., Thomas, B. C. & Banfield, J. F., 2019, In : Nature Microbiology. 4, p. 693-700

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
41 Downloads (Pure)

Pathogen surveillance in the informal settlement, Kibera, Kenya, using a metagenomics approach

Hendriksen, R. S., Lukjancenko, O., Munk, P., Hjort Hjelmsø, M., Verani, J. R., Ng'eno, E., Bigogo, G., Kiplangat, S., Oumar, T., Bergmark, L., Röder, T., Neatherlin, J. C., Clayton, O., Hald, T., Karlsmose, S., Pamp, S. J., Fields, B., Montgomery, J. M. & Møller Aarestrup, F., 2019, In : P L o S One. 14, 10, 15 p., e0222531.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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The antimicrobial resistome in relation to antimicrobial use and biosecurity in pig farming, a metagenome-wide association study in nine European countries

Van Gompel, L., Luiken, R. E. C., Sarrazin, S., Munk, P., Knudsen, B. E., Hansen, R. B., Bossers, A., Aarestrup, F. M., Dewulf, J., Wagenaar, J. A., Mevius, D. J., Schmitt, H., Heederik, D. J. J., Dorado-García, A., Smit, L. A. M. & consortium, EFFORT., 2019, In : Journal of Antimicrobial Chemotherapy. 74, 4, p. 865-876

Research output: Contribution to journalJournal articleResearchpeer-review

2018
128 Downloads (Pure)

Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries

Munk, P., Knudsen, B. E., Lukjacenko, O., Duarte, A. S. R., Van Gompel, L., Luiken, R. E. C., Smit, L. A. M., Schmitt, H., Garcia, A. D., Hansen, R. B., Petersen, T. N., Bossers, A., Ruppé, E., Graveland, H., van Essen, A., Gonzalez-Zorn, B., Moyano, G., Sanders, P., Chauvin, C., David, J. & 21 others, Battisti, A., Caprioli, A., Dewulf, J., Blaha, T., Wadepohl, K., Brandt, M., Wasyl, D., Skarzyńska, M., Zajac, M., Daskalov, H., Saatkamp, H. W., Stärk, K. D. C., Lund, O., Hald, T., Pamp, S. J., Vigre, H., Heederik, D., Wagenaar, J. A., Mevius, D., Møller Aarestrup, F. & EFFORT Group, 1 Aug 2018, In : Nature Microbiology. 3, 8, p. 898-908

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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2017

The association between measurements of antimicrobial use and resistance in the faeces microbiota of finisher batches

Dalhoff Andersen, V., de Knegt, L., Munk, P., Jensen, M. S., Agersø, Y., Aarestrup, F. M. & Vigre, H., 2017, In : Epidemiology and Infection. 145, 13, p. 2827-2837 11 p.

Research output: Contribution to journalJournal articleResearchpeer-review

2016
202 Downloads (Pure)

A sampling and metagenomic sequencing-based methodology for monitoring antimicrobial resistance in swine herds

Munk, P., Dalhoff Andersen, V., de Knegt, L., Jensen, M. S., Knudsen, B. E., Lukjancenko, O., Mordhorst, H., Clasen, J., Agersø, Y., Folkesson, A., Pamp, S. J., Vigre, H. & Aarestrup, F. M., 2016, In : Journal of Antimicrobial Chemotherapy. 72, p. 385-392 8 p., dkw415.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
241 Downloads (Pure)

Impact of Sample Type and DNA Isolation Procedure on Genomic Inference of Microbiome Composition

Knudsen, B. E., Bergmark, L., Munk, P., Lukjancenko, O., Priemé, A., Aarestrup, F. M. & Pamp, S. J., 2016, In : mSystems. 1, 5, 15 p., e00095-16.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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