Patrick Munk

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Emailpmunfood.dtudk
Websitehttp://www.food.dtu.dk

Henrik Dams Allé, 204, 105
2800 Kgs. Lyngby
Denmark

Accepting PhD Students

External positions

Member, The Danish Young Academy

1 Sept 2024 → 1 Sept 2029

Keywords

User defined:
Bioinformatics
Microbiology
supercomputer
Antimicrobial resistance
Antibiotics
Bacteria
Genomics
Metagenomics
Microbiome

Expertise related to UN Sustainable Development Goals

In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):

SDG 3 Good Health and Well-being
SDG 14 Life Below Water
SDG 15 Life on Land

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47 Journal article
6 Net publication - Internet publication
2 Conference abstract in proceedings
2 Conference abstract for conference
More

Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance
Munk, P., Brinch, C., Møller, F. D., Petersen, T. N., Hendriksen, R. S., Seyfarth, A. M., Kjeldgaard, J. S., Svendsen, C. A., van Bunnik, B., Berglund, F., Global Sewage Surveillance Consortium, Larsson, D. G. J., Koopmans, M., Woolhouse, M. & Aarestrup, F. M., 2022, In: Nature Communications. 13, 1, 16 p., 7251.
Research output: Contribution to journal › Journal article › Research › peer-review

Open Access
File
107 Downloads (Orbit)
Time-series sewage metagenomics distinguishes seasonal, human-derived and environmental microbial communities potentially allowing source-attributed surveillance
Becsei, Á., Fuschi, A., Otani, S., Kant, R., Weinstein, I., Alba, P., Stéger, J., Visontai, D., Brinch, C., de Graaf, M., Schapendonk, C. M. E., Battisti, A., De Cesare, A., Oliveri, C., Troja, F., Sironen, T., Vapalahti, O., Pasquali, F., Bányai, K. & Makó, M. & 7 others, Pollner, P., Merlotti, A., Koopmans, M., Csabai, I., Remondini, D., Aarestrup, F. M. & Munk, P., 2024, In: Nature Communications. 15, 1, 13 p., 7551.
Research output: Contribution to journal › Journal article › Research › peer-review

Open Access
File
101 Downloads (Orbit)
Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries
Munk, P., Knudsen, B. E., Lukjacenko, O., Duarte, A. S. R., Van Gompel, L., Luiken, R. E. C., Smit, L. A. M., Schmitt, H., Garcia, A. D., Hansen, R. B., Petersen, T. N., Bossers, A., Ruppé, E., Graveland, H., van Essen, A., Gonzalez-Zorn, B., Moyano, G., Sanders, P., Chauvin, C. & David, J. & 21 others, Battisti, A., Caprioli, A., Dewulf, J., Blaha, T., Wadepohl, K., Brandt, M., Wasyl, D., Skarzyńska, M., Zajac, M., Daskalov, H., Saatkamp, H. W., Stärk, K. D. C., Lund, O., Hald, T., Pamp, S. J., Vigre, H., Heederik, D., Wagenaar, J. A., Mevius, D., Møller Aarestrup, F. & EFFORT Group, 1 Aug 2018, In: Nature Microbiology. 3, 8, p. 898-908
Research output: Contribution to journal › Journal article › Research › peer-review

Open Access
File
1364 Downloads (Orbit)
A comprehensive database for biological data derived from sewage in five European cities
Becsei, Á., Munk, P., Fuschi, A., Otani, S., Stéger, J., Visontai, D., Papp, K., Brinch, C., Kant, R., Weinstein, I., Vapalahti, O., de Graaf, M., Schapendonk, C. M. E., Roelfsema, J., van den Beld, M., Pijnacker, R., Franz, E., Alba, P., Battisti, A. & De Cesare, A. & 15 others, Indio, V., Troja, F., Sironen, T., Oliveri, C., Pasquali, F., Liachko, I., Auch, B., O'Cathail, C., Bányai, K., Makó, M., Pollner, P., Koopmans, M., Csabai, I., Remondini, D. & Aarestrup, F. M., 2026, In: Database: The Journal of Biological Databases and Curation. 2026, 7 p., baaf089.
Research output: Contribution to journal › Journal article › Research › peer-review

Open Access
File
28 Downloads (Orbit)
Controlled immobilization of single-domain antibodies using cellulose-binding modules for AB5-type toxin detection in paper-based assays
Belfakir, S. B., Jürgensen, J. A., Petersson, M., Wraae, M. S., Munk, P., Thumtecho, S., Masteghin, M. G., Ljungars, A., Laustsen, A. H., Thrane, S. W. & Ross, G. M. S., 2026, In: RSC Advances. 16, 23, p. 21423-21437
Research output: Contribution to journal › Journal article › Research › peer-review

Open Access
File
1 Downloads (Orbit)

2 Active
4 Finished

Bioinformatic tools for genomic reconstruction in the face of sequence redundancy
Vojtková, M. (PhD Student), Munk, P. (Main Supervisor) & Brinch, C. (Supervisor)
01/12/2025 → 30/11/2028
Project: PhD
Bioinformatic methods for multi-metagenome integration in antimicrobial resistance research
Freitag, R. (PhD Student), Munk, P. (Main Supervisor) & Brinch, C. (Supervisor)
01/06/2025 → 31/05/2028
Project: PhD
Host range and epidemiology of antibiotic resistance in global genome collections
Thorn, A. V. (PhD Student), Aarestrup, F. M. (Main Supervisor) & Munk, P. (Supervisor)
01/11/2021 → 23/03/2026
Project: PhD
Analysis of global emergence and spread of antimicrobial resistance in 150k host and environmental samples
Martiny, H.-M. (PhD Student), Estibaritz, A. A. (Examiner), Friedman, J. (Examiner), Petersen, T. N. (Main Supervisor), Brinch, C. (Supervisor) & Munk, P. (Supervisor)
15/11/2019 → 01/03/2023
Project: PhD
Veterinærforlig III
Andersen, V. D. (PI), Vigre, H. (PI), Aarestrup, F. M. (PI), Munk, P. (PI) & Jensen, M. S. (PI)
01/09/2018 → 31/08/2021
Project: Research

2 Membership of commitees, commissions, boards, councils, associations, organisations, or similar
1 Board duties in companies, associations, or public organisations
1 Membership of research networks or expert groups
1 Talks and presentations in private or public companies and organisations

The Young Academy of Technology, Science, and Innovation (External organisation)
Munk, P. (Member)
2025 → 2030
Activity: Membership › Membership of commitees, commissions, boards, councils, associations, organisations, or similar
videnskab.dk (External organisation)
Munk, P. (Member)
2025 → …
Activity: Membership › Board duties in companies, associations, or public organisations
Should researchers be ‘influencers’ to maximise their research impact?
Hermund, D. B. (Speaker) & Munk, P. (Speaker)
6 Feb 2025
Activity: Talks and presentations › Talks and presentations in private or public companies and organisations
The Danish Young Academy (External organisation)
Munk, P. (Member)
2024 → 2029
Activity: Membership › Membership of commitees, commissions, boards, councils, associations, organisations, or similar
AMR-alliancen (External organisation)
Munk, P. (Member)
2024 → …
Activity: Membership › Membership of research networks or expert groups

PanRes - Collection of antimicrobial resistance genes
Martiny, H.-M. (Creator), Pyrounakis, N. (Creator), Lukjančenko, O. (Creator), Petersen, T. N. (Creator), Aarestrup, F. M. (Creator), Clausen, P. T. L. C. (Creator) & Munk, P. (Creator), Zenodo, 27 Nov 2023
DOI: 10.5281/zenodo.10091602, https://zenodo.org10091602
Dataset
MetalResistance - Collection of metal resistance genes
Martiny, H.-M. (Creator), Pyrounakis, N. (Creator), Lukjančenko, O. (Creator), Petersen, T. N. (Creator), Aarestrup, F. M. (Creator), Clausen, P. T. L. C. (Creator) & Munk, P. (Creator), Zenodo, 31 Aug 2023
DOI: 10.5281/zenodo.8108201, https://zenodo.org/record/8108201
Dataset

Antibiotikaresistens
Munk, P.
14/11/2025
1 Media contribution
Press/Media: Press / Media
Dansk gris kan rumme et af svarene på global sundhedskrise
Munk, P.
20/09/2024
1 Media contribution
Press/Media: Press / Media
Scientists develop new method to analyze sewage data for epidemic monitoring
Munk, P.
18/09/2024
1 item of Media coverage
Press/Media: Press / Media
Forskere finder tusindvis af ukendte bakterier i spildevandet fra København og fire andre storbyer
Munk, P.
17/09/2024
1 item of Media coverage
Press/Media: Press / Media
Ny forskning chokerer: Tusindvis af ukendte bakterier i Københavns kloakker
Munk, P. & Aarestrup, F. M.
17/09/2024
1 item of Media coverage
Press/Media: Press / Media

Patrick Munk

Personal profile

External positions

Keywords

Expertise related to UN Sustainable Development Goals

Fingerprint

Collaborations and top research areas from the last five years

Dive into details

Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance

Time-series sewage metagenomics distinguishes seasonal, human-derived and environmental microbial communities potentially allowing source-attributed surveillance

Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries

A comprehensive database for biological data derived from sewage in five European cities

Controlled immobilization of single-domain antibodies using cellulose-binding modules for AB5-type toxin detection in paper-based assays

Bioinformatic tools for genomic reconstruction in the face of sequence redundancy

Bioinformatic methods for multi-metagenome integration in antimicrobial resistance research

Host range and epidemiology of antibiotic resistance in global genome collections

Analysis of global emergence and spread of antimicrobial resistance in 150k host and environmental samples

Veterinærforlig III

The Young Academy of Technology, Science, and Innovation (External organisation)

videnskab.dk (External organisation)

Should researchers be ‘influencers’ to maximise their research impact?

The Danish Young Academy (External organisation)

AMR-alliancen (External organisation)

PanRes - Collection of antimicrobial resistance genes

MetalResistance - Collection of metal resistance genes

Antibiotikaresistens

Dansk gris kan rumme et af svarene på global sundhedskrise

Scientists develop new method to analyze sewage data for epidemic monitoring

Forskere finder tusindvis af ukendte bakterier i spildevandet fra København og fire andre storbyer

Ny forskning chokerer: Tusindvis af ukendte bakterier i Københavns kloakker

Patrick Munk

Personal profile

External positions

Keywords

Expertise related to UN Sustainable Development Goals

Fingerprint

Collaborations and top research areas from the last five years

Publications

Projects

Activities

Datasets

Press/Media