Research output per year
Research output per year
Personal profile
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
External positions
Member, The Danish Young Academy
1 Sept 2024 → 1 Sept 2029
Keywords
- User defined:
- Bioinformatics
- Microbiology
- supercomputer
- Antimicrobial resistance
- Antibiotics
- Bacteria
- Genomics
- Metagenomics
- Microbiome
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Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
Publications
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Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance
Munk, P., Brinch, C., Møller, F. D., Petersen, T. N., Hendriksen, R. S., Seyfarth, A. M., Kjeldgaard, J. S., Svendsen, C. A., van Bunnik, B., Berglund, F., Global Sewage Surveillance Consortium, Larsson, D. G. J., Koopmans, M., Woolhouse, M. & Aarestrup, F. M., 2022, In: Nature Communications. 13, 1, 16 p., 7251.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile92 Downloads (Orbit) -
Time-series sewage metagenomics distinguishes seasonal, human-derived and environmental microbial communities potentially allowing source-attributed surveillance
Becsei, Á., Fuschi, A., Otani, S., Kant, R., Weinstein, I., Alba, P., Stéger, J., Visontai, D., Brinch, C., de Graaf, M., Schapendonk, C. M. E., Battisti, A., De Cesare, A., Oliveri, C., Troja, F., Sironen, T., Vapalahti, O., Pasquali, F., Bányai, K. & Makó, M. & 7 others, , 2024, In: Nature Communications. 15, 1, 13 p., 7551.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile32 Downloads (Orbit) -
Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries
Munk, P., Knudsen, B. E., Lukjacenko, O., Duarte, A. S. R., Van Gompel, L., Luiken, R. E. C., Smit, L. A. M., Schmitt, H., Garcia, A. D., Hansen, R. B., Petersen, T. N., Bossers, A., Ruppé, E., Graveland, H., van Essen, A., Gonzalez-Zorn, B., Moyano, G., Sanders, P., Chauvin, C. & David, J. & 21 others, , 1 Aug 2018, In: Nature Microbiology. 3, 8, p. 898-908Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile1242 Downloads (Orbit) -
High throughput single cell metagenomic sequencing with semi-permeable capsules: unraveling microbial diversity at the single-cell level in sewage and fecal microbiomes
Ling, M., Szarvas, J., Kurmauskaitė, V., Kiseliovas, V., Žilionis, R., Avot, B., Munk, P. & M. Aarestrup, F., 2025, In: Frontiers in Microbiology. 15, 13 p., 1516656.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile54 Downloads (Orbit) -
Resistance genes are not like chemical pollutants and surveillance of them should reflect that
Munk, P., Brinch, C. & Aarestrup, F. M., 2025, In: Future Microbiology. 20, 5, p. 379-381 3 p.Research output: Contribution to journal › Editorial › peer-review
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Bioinformatic methods for multi-metagenome integration in antimicrobial resistance research
Freitag, R. (PhD Student), Munk, P. (Main Supervisor) & Brinch, C. (Supervisor)
01/06/2025 → 31/05/2028
Project: PhD
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Host range and epidemiology of antibiotic resistance in global genome collections
Thorn, A. V. (PhD Student), Aarestrup, F. M. (Main Supervisor) & Munk, P. (Supervisor)
01/11/2021 → 23/03/2026
Project: PhD
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Analysis of global emergence and spread of antimicrobial resistance in 150k host and environmental samples
Martiny, H.-M. (PhD Student), Estibaritz, A. A. (Examiner), Friedman, J. (Examiner), Petersen, T. N. (Main Supervisor), Brinch, C. (Supervisor) & Munk, P. (Supervisor)
15/11/2019 → 01/03/2023
Project: PhD
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Veterinærforlig III
Andersen, V. D. (PI), Vigre, H. (PI), Aarestrup, F. M. (PI), Munk, P. (PI) & Jensen, M. S. (PI)
01/09/2018 → 31/08/2021
Project: Research
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Genomic antimicrobial resistance, prediction of functionality, resistance gene mobility and zoonotic relevance
Munk, P. (PhD Student), Aarestrup, F. M. (Main Supervisor), Agersø, Y. (Supervisor), Vigre, H. (Supervisor), Bahl, M. I. (Examiner), van Schaik, W. (Examiner) & Hansen, L. H. (Examiner)
15/12/2013 → 16/05/2018
Project: PhD
Datasets
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PanRes - Collection of antimicrobial resistance genes
Martiny, H.-M. (Creator), Pyrounakis, N. (Creator), Lukjančenko, O. (Creator), Petersen, T. N. (Creator), Aarestrup, F. M. (Creator), Clausen, P. T. L. C. (Creator) & Munk, P. (Creator), Zenodo, 27 Nov 2023
DOI: 10.5281/zenodo.10091602, https://zenodo.org10091602
Dataset
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MetalResistance - Collection of metal resistance genes
Martiny, H.-M. (Creator), Pyrounakis, N. (Creator), Lukjančenko, O. (Creator), Petersen, T. N. (Creator), Aarestrup, F. M. (Creator), Clausen, P. T. L. C. (Creator) & Munk, P. (Creator), Zenodo, 31 Aug 2023
DOI: 10.5281/zenodo.8108201, https://zenodo.org/record/8108201
Dataset
Press/Media
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Dansk gris kan rumme et af svarene på global sundhedskrise
20/09/2024
1 Media contribution
Press/Media: Press / Media
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Scientists develop new method to analyze sewage data for epidemic monitoring
18/09/2024
1 item of Media coverage
Press/Media: Press / Media
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Ny forskning chokerer: Tusindvis af ukendte bakterier i Københavns kloakker
17/09/2024
1 item of Media coverage
Press/Media: Press / Media
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Forskere finder kolera og tusindvis af ukendte bakterier i Københavns kloakker
17/09/2024
1 item of Media coverage
Press/Media: Press / Media
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Forskere finder tusindvis af ukendte bakterier i spildevandet fra København og fire andre storbyer
17/09/2024
1 item of Media coverage
Press/Media: Press / Media