Publications per year
Publications per year
Personal profile
Profile
Ole Winther’s (OW) research subject is machine learning. Machine learning combines statistical modelling and artificial intelligence, drawing inspiration from neuroscience for model building and often deals with large amounts of data. OW works with methods development and applications in bioinformatics (computer-driven large scale biological data analysis), neuroinformatics, and recommender systems. For example, collaborative filtering can be used to learn personalized movie recommendations from data bases of the users' taste. The fundamental methods have many application in the information society and modern data-driven sciences. OW has published 100+ scientific papers, has supervised/is currently supervising 15+ PhD-students plus 40+ master projects and is collaborating with companies and research institutions such as Siemens Windpower, GreenGoEnergy, Tradeshift and Biotech Research and Innovation Centre (BRIC), University of Copenhagen (KU). Ole Winther (Cand. Scient. physics, Bac. computer science, 94 and PhD physics 98, KU) has been post doc at Lund University, Sweden and Center for Biological Sequence Analyse, Technical University of Denmark (DTU). OW is professor at Cognitive Systems (CogSys), DTU Compute, DTU and group leader in Bioinformatics, KU. More information is available from http://cogsys.compute.dtu.dk/staff/winther/ .
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
Keywords
- User defined:
- neuroinformatics
- Bioinformatics
- machine learning
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Publications
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Aligning Optimization Trajectories with Diffusion Models for Constrained Design Generation
Giannone, G., Srivastava, A., Winther, O. & Ahmed, F., 2024, (Accepted/In press) Proceedings of the 37th Conference on Neural Information Processing Systems. 32 p.Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
Open AccessFile57 Downloads (Pure) -
Can large language models reason about medical questions?
Liévin, V., Hother, C. E., Motzfeldt, A. G. & Winther, O., 2024, In: Patterns. 5, 3, 12 p., 100943.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile47 Downloads (Pure) -
DeepLoc 2.1: multi-label membrane protein type prediction using protein language models
Ødum, M. T., Teufel, F., Thumuluri, V., Almagro Armenteros, J. J., Johansen, A. R., Winther, O. & Nielsen, H., 2024, In: Nucleic Acids Research. 6 p., gkae237.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile25 Downloads (Pure) -
DeepLocRNA: an interpretable deep learning model for predicting RNA subcellular localisation with domain-specific transfer-learning
Wang, J., Horlacher, M., Cheng, L. & Winther, O., 2024, In: Bioinformatics. 40, 2, 10 p., btae065.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile11 Downloads (Pure) -
DiscoTope-3.0: improved B-cell epitope prediction using inverse folding latent representations
Høie, M. H., Gade, F. S., Johansen, J., Würtzen, C., Winther, O., Nielsen, M. & Marcatili, P., 2024, In: Frontiers in Immunology. 15, 12 p., 1322712.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile22 Downloads (Pure)
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PanKB: Advancing Biotechnology with Pangenomics
Sun, B. (PhD Student), Santos Delgado, A. (Main Supervisor), Phaneuf, P. V. (Supervisor), Winther, O. (Supervisor) & Palsson, B. O. (Supervisor)
01/02/2024 → 31/01/2027
Project: PhD
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Denoising Diffusion Models
Nielsen, B. M. G. (PhD Student), Winther, O. (Main Supervisor) & Schmidt, M. N. (Supervisor)
01/11/2022 → 31/10/2025
Project: PhD
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Equivariant deep learning for network data
Hansen, A. A. (PhD Student), Feragen, A. (Main Supervisor), Winther, O. (Supervisor) & Calissano, A. (Supervisor)
01/01/2022 → 06/05/2025
Project: PhD
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POP-NETS: Learning from Populations of Networks
Feragen, A. (PI), Hansen, A. A. (PhD Student) & Winther, O. (Supervisor)
01/01/2022 → 31/12/2024
Project: Research
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Improving Deep Learning Explainability with Interpretable Outputs and Representations
Christensen, A. (PhD Student), Winther, O. (Main Supervisor) & Akata, Z. (Supervisor)
01/12/2021 → 27/03/2025
Project: PhD
Activities
- 2 Conference presentations
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Learning the Language of Life
Nielsen, H. (Guest lecturer), Almagro Armenteros, J. J. (Guest lecturer), Johansen, A. R. (Guest lecturer) & Winther, O. (Guest lecturer)
27 Nov 2020Activity: Talks and presentations › Conference presentations
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Learning the language of life
Almagro Armenteros, J. J. (Guest lecturer), Nielsen, H. (Other), Johansen, A. R. (Other) & Winther, O. (Other)
25 Jul 2019Activity: Talks and presentations › Conference presentations
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