Research output per year
Research output per year
Personal profile
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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Collaborations and top research areas from the last five years
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MAGinator enables accurate profiling of de novo MAGs with strain-level phylogenies
Zachariasen, T., Russel, J., Petersen, C., Vestergaard, G. A., Shah, S., Atienza Lopez, P., Passali, M., Turvey, S. E., Sørensen, S. J., Lund, O., Stokholm, J., Brejnrod, A. & Thorsen, J., 2024, In: Nature Communications. 15, 1, 10 p., 5734.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile19 Downloads (Orbit) -
Deep integrative models for large-scale human genomics
Sigurdsson, A. I., Louloudis, I., Banasik, K., Westergaard, D., Winther, O., Lund, O., Ostrowski, S. R., Erikstrup, C., Pedersen, O. B. V., Nyegaard, M., Genomic Consortium, D., Brunak, S., Vilhjálmsson, B. J. & Rasmussen, S., 2023, In: Nucleic Acids Research. 51, 12, 16 p., e67.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile162 Downloads (Orbit) -
Metagenomic DNA sequencing for semi-quantitative pathogen detection from urine: a prospective, laboratory-based, proof-of-concept study
Janes, V. A., Matamoros, S., Munk, P., Clausen, P. T. L. C., Koekkoek, S. M., Koster, L. A. M., Jakobs, M. E., de Wever, B., Visser, C. E., Aarestrup, F. M., Lund, O., de Jong, M. D., Bossuyt, P. M. M., Mende, D. R. & Schultsz, C., 2022, In: Lancet. Microbe. 3, 8, p. e588-e597 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile126 Downloads (Orbit) -
PlasmidHostFinder: Prediction of Plasmid Hosts Using Random Forest
Aytan-Aktug, D., Clausen, P. T. L. C., Szarvas, J., Munk, P., Otani, S., Nguyen, M., Davis, J. J., Lund, O. & Aarestrup, F. M., 2022, In: mSystems. 7, 2, 16 p., e0118021.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile237 Downloads (Orbit) -
SourceFinder: a Machine-Learning-Based Tool for Identification of Chromosomal, Plasmid, and Bacteriophage Sequences from Assemblies
Aytan-Aktug, D., Grigorjev, V., Szarvas, J., Clausen, P. T. L. C., Munk, P., Nguyen, M., Davis, J. J., Aarestrup, F. M. & Lund, O., 2022, In: Microbiology Spectrum. 10, 6, 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile108 Downloads (Orbit)
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Explainable AI and Bioinformatics for Health
Papagoras, K. A. (PhD Student), Lund, O. (Main Supervisor), Quaglia, C. B. (Supervisor) & Ebrahimi, P. (Supervisor)
01/01/2025 → 31/12/2027
Project: PhD
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Causal language models and graph analysis for disease landscapes
Gade, F. S. (PhD Student), Lund, O. (Main Supervisor), Kitchen, R. (Supervisor) & Mendoza, M. L. Z. (Supervisor)
15/05/2024 → 14/05/2027
Project: PhD
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Predicting patient trajectories in oncological surgery
Quarles van Ufford, P. (PhD Student), Lund, O. (Main Supervisor), Olsen, L. R. (Supervisor), Gogenur, I. (Supervisor) & Rose, M. H. (Supervisor)
15/08/2023 → 14/08/2026
Project: PhD
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Development of protein structure based methods for T cell specificity prediction
Deleuran, S. N. (PhD Student), Nielsen, M. (Main Supervisor) & Lund, O. (Supervisor)
01/06/2023 → 31/05/2026
Project: PhD
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Immune receptor Immunoinformatics
Clifford, J. N. (PhD Student), Nielsen, M. (Main Supervisor), Lund, O. (Supervisor), Akbar, R. (Examiner) & Deane, C. (Examiner)
01/10/2022 → 30/09/2025
Project: PhD