Research output per year
Research output per year
Personal profile
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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Metagenomic DNA sequencing for semi-quantitative pathogen detection from urine: a prospective, laboratory-based, proof-of-concept study
Janes, V. A., Matamoros, S., Munk, P., Clausen, P. T. L. C., Koekkoek, S. M., Koster, L. A. M., Jakobs, M. E., de Wever, B., Visser, C. E., Aarestrup, F. M., Lund, O., de Jong, M. D., Bossuyt, P. M. M., Mende, D. R. & Schultsz, C., 2022, In: Lancet. Microbe. 3, 8, p. e588-e597 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile35 Downloads (Pure) -
PlasmidHostFinder: Prediction of Plasmid Hosts Using Random Forest
Aytan-Aktug, D., Clausen, P. T. L. C., Szarvas, J., Munk, P., Otani, S., Nguyen, M., Davis, J. J., Lund, O. & Aarestrup, F. M., 2022, In: mSystems. 7, 2, 16 p., e0118021.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile27 Downloads (Pure) -
Automated download and clean-up of family specific databases for kmer-based virus identification
Allesøe, R. L., Lemvigh, C. K., Phan, M. V. T., Clausen, P. T. L. C., Florensa, A. F., Koopmans, M. P. G., Lund, O. & Cotten, M., 2021, In: Bioinformatics. 37, 5, p. 705–710Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile91 Downloads (Pure) -
Identification of single-nucleotide polymorphisms in the mitochondrial genome and kelch 13 gene of Plasmodium falciparum in different geographical populations
Nydahl, T. K., Ahorhorlu, S. Y., Ndiaye, M., Das, M. K., Hansson, H., Bravo, M. C., Wang, C. W., Lusingu, J., Theisen, M., Singh, S. K., Singh, S., Campino, S., Lund, O., Roper, C. & Alifrangis, M., 2021, In: American Journal of Tropical Medicine and Hygiene. 105, 4, p. 1085-1092 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile13 Downloads (Pure) -
Machine learning predicts and provides insights into milk acidification rates of lactococcus lactis
Karlsen, S. T., Vesth, T. C., Oregaard, G., Poulsen, V. K., Lund, O., Henderson, G. & Bælum, J., 2021, In: P L o S One. 16, 3 March, 22 p., e0246287.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile73 Downloads (Pure)
Projects
- 65 Finished
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Machine learning of antimicrobial resistance
Aytan-Aktug, D., Aarestrup, F. M., Lund, O., Brinch, C., Hasman, H. & Xia, F.
15/10/2018 → 07/03/2022
Project: PhD
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PROVIDE: PROVIDE - Protein valorization through informatics, hydrolysis, and separation
Hansen, E. B., Bang-Berthelsen, I., Jacobsen, C., Holdt, S. L., García Moreno, P. J., Lund, O., Marcatili, P., Hyldig, G. & Sørensen, R.
01/09/2017 → 01/11/2022
Project: Research
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Fast-tracking the identification of safe and effective probiotic bacteria by in sillico prediction of bacterial genomic features
Tang Karlsen, S., Bælum, J., Vesth, T. C., Petersen, T. N., Lagesen, K., Tolstrup, N. & Lund, O.
01/08/2017 → 20/05/2021
Project: PhD
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Evergreen methods for phylogeny
Szarvas, J., Aarestrup, F. M., Kaas, R. S., Hasman, H., Timme, R. E. & Lund, O.
01/08/2017 → 18/03/2021
Project: PhD
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Typing and pheno typing based on direct sequencing of samples
Clausen, P. T. L. C., Aarestrup, F. M., Kaas, R. S., Krogh, A. S., Phillippy, A. & Lund, O.
01/07/2017 → 15/09/2020
Project: PhD