20032020

Research output per year

If you made any changes in Pure these will be visible here soon.

Research Output

A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana.

Lindemose, S., Jensen, M. K., de Velde, J. V., O'Shea, C., Heyndrickx, K. S., Workman, C., Vandepoele, K., Skriver, K. & De Masi, F., 2014, In : Nucleic acids research. 42, 12, p. 7681-7693 13 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
405 Downloads (Pure)

An Orthogonal and pH-Tunable Sensor-Selector for Muconic Acid Biosynthesis in Yeast

Snoek, T., Romero-Suarez, D., Zhang, J., Ambri, F., Skjoedt, M. L., Sudarsan, S., Jensen, M. K. & Keasling, J. D., 2018, In : A C S Synthetic Biology. 7, 4, p. 995-1003

Research output: Contribution to journalLetterResearchpeer-review

Open Access
File
44 Downloads (Pure)

Assembly and Multiplex Genome Integration of Metabolic Pathways in Yeast Using CasEMBLR

Jakočiūnas, T., Jensen, E. D., Jensen, M. K. & Keasling, J. D., 2018, Synthetic Metabolic Pathways. Vol. 1671. p. 185-201 (Methods in Molecular Biology).

Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana.

Jensen, M. K., Lindemose, S., De Masi, F., Reimer, J. J., Nielsen, M., Perera, V., Workman, C., Turck, F., Grant, M. R., Mundy, J., Petersen, M. & Skriver, K., 2013, In : FEBS Open Bio. 3, p. 321-327

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
268 Downloads (Pure)

Ca2+ Induces Spontaneous Dephosphorylation of a Novel P5A-type ATPase

Sorensen, D. M., Moller, A. B., Jakobsen, M. K., Jensen, M. K., Vangheluwe, P., Buch-Pedersen, M. J. & Palmgren, M. G., 2012, In : Journal of Biological Chemistry. 287, 34, p. 28336-28348

Research output: Contribution to journalJournal articleResearchpeer-review

CasEMBLR: Cas9-Facilitated Multiloci Genomic Integration of in Vivo Assembled DNA Parts in Saccharomyces cerevisiae

Jakociunas, T., Rajkumar, A. S., Zhang, J., Arsovska, D., Rodriguez Prado, E. A., Jendresen, C. B., Skjødt, M. L., Nielsen, A. T., Borodina, I., Jensen, M. K. & Keasling, J., 2015, In : A C S Synthetic Biology. 4, 11, p. 1226-1234 9 p.

Research output: Contribution to journalJournal articleResearchpeer-review

CasPER, a method for directed evolution in genomic contexts using mutagenesis and CRISPR/Cas9

Jakočiūnas, T., Pedersen, L. E., Lis, A. V., Jensen, M. K. & Keasling, J. D., 2018, In : Metabolic Engineering. 48, p. 288-296

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
486 Downloads (Pure)

Coupling S-adenosylmethionine-dependent methylation to growth: Design and uses

Luo, H., Hansen, A. S. L., Yang, L., Schneider, K., Kristensen, M., Christensen, U., Christensen, H. B., Du, B., Özdemir, E., Feist, A. M., Keasling, J. D., Jensen, M. K., Herrgård, M. J. & Palsson, B. O., 2019, In : PLOS Biology. 17, 3, e2007050.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
270 Downloads (Pure)

CrEdit: CRISPR mediated multi-loci gene integration in Saccharomyces cerevisiae

Ronda, C., Maury, J., Jakociunas, T., Jacobsen, S. A. B., Germann, S. M., Harrison, S. J., Borodina, I., Keasling, J. D., Jensen, M. K. & Nielsen, A. T., 2015, In : Microbial Cell Factories. 14, 97, 11 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
525 Downloads (Pure)

CRISPR/Cas9 advances engineering of microbial cell factories

Jakociunas, T., Jensen, M. K. & Keasling, J. D., 2016, In : Metabolic Engineering. 34, p. 44-59 16 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Design, Engineering, and Characterization of Prokaryotic Ligand-Binding Transcriptional Activators as Biosensors in Yeast

Ambri, F., Snoek, T., Skjødt, M. L., Jensen, M. K. & Keasling, J. D., 2018, Synthetic Metabolic Pathways. Springer, Vol. 1671. p. 269-290 (Methods in Molecular Biology).

Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

Design principles for nuclease-deficient CRISPR-based transcriptional regulators

Jensen, M. K., 2018, In : FEMS Yeast Research. 18, 4, foy039.

Research output: Contribution to journalReviewResearchpeer-review

Open Access
File
398 Downloads (Pure)

Development of biosensors and their application in metabolic engineering

Zhang, J., Jensen, M. K. & Keasling, J., 2015, In : Current Opinion in Chemical Biology. 28, 8 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Easyclone-markerfree: A vector toolkit for marker-less integration of genes into saccharomyces cerevisiae via CRISPR-Cas9

Jessop Fabre, M., Jakociunas, T., Stovicek, V., Dai, Z., Jensen, M. K., Keasling, J. & Borodina, I., 2017, Synthetic Biology Conference, SEED 2017: Engineering, Evolution, and Design. American Institute of Chemical Engineers, p. 149-150 2 p.

Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

EasyClone-MarkerFree: A vector toolkit for marker-less integration of genes into Saccharomyces cerevisiae via CRISPR-Cas9

Fabre, M. M. J., Jakociunas, T., Stovicek, V., Dai, Z., Jensen, M. K., Keasling, J. & Borodina, I., 2016, In : Biotechnology Journal. 11, 8, p. 1110-1117 11 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
894 Downloads (Pure)

Engineered Production of Short-Chain Acyl-Coenzyme A Esters in Saccharomyces cerevisiae

Krink-Koutsoubelis, N., Loechner, A. C., Lechner, A., Link, H., Denby, C. M., Vögeli, B., Erb, T. J., Yuzawa, S., Jakociunas, T., Katz, L., Jensen, M. K., Sourjik, V. & Keasling, J. D., 2018, In : A C S Synthetic Biology. 7, 4, p. 1105-1115 11 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Engineered Reversal of Function in Glycolytic Yeast Promoters

Rajkumar, A. S., Özdemir, E., Lis, A. V., Schneider, K., Qin, J., Jensen, M. K. & Keasling, J. D., 2019, In : ACS Synthetic Biology. 8, 6, p. 1462-1468 7 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
187 Downloads (Pure)

Engineering an NADPH/NADPRedox Biosensor in Yeast

Zhang, J., Sonnenschein, N., Pihl, T. P. B., Pedersen, K. R., Jensen, M. K. & Keasling, J., 2016, In : A C S Synthetic Biology. 5, 12, p. 1546–1556 11 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Engineering G protein-coupled receptor signalling in yeast for biotechnological and medical purposes

Lengger, B. & Jensen, M. K., 2020, In : FEMS Yeast Research. 20, 1, foz087.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
50 Downloads (Pure)

Engineering of synthetic, stress-responsive yeast promoters

Rajkumar, A. S., Liu, G., Bergenholm, D., Arsovska, D., Kristensen, M., Nielsen, J., Jensen, M. K. & Keasling, J., 2016, In : Nucleic acids research. 44, 17, 12 p., e136.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
364 Downloads (Pure)

Engineering prokaryotic transcriptional activators as metabolite biosensors in yeast

Skjødt, M. L., Snoek, T., Kildegaard, K. R., Arsovska, D., Eichenberger, M., Goedecke, T. J., Rajkumar, A. S., Zhang, J., Kristensen, M., Lehka, B., Siedler, S., Borodina, I., Jensen, M. K. & Keasling, J., 2016, In : Nature Chemical Biology. 12, 11, p. 951-958 10 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Evolution-guided engineering of small-molecule biosensors

Snoek, T., Chaberski, E. K., Ambri, F., Kol, S., Bjørn, S. P., Pang, B., Barajas, J. F., Welner, D. H., Jensen, M. K. & Keasling, J. D., 2020, In : Nucleic acids research. 48, 1, e3.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
86 Downloads (Pure)

Exploring small-scale chemostats to scale up microbial processes: 3-hydroxypropionic acid production in S. cerevisiae

Lis, A. V., Schneider, K., Weber, J., Keasling, J. D., Jensen, M. K. & Klein, T., 2019, In : Microbial Cell Factories. 18, 1, 11 p., 50.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
225 Downloads (Pure)

Genetically-encoded biosensors for yeast cell factory optimization

Ambri, F., Jensen, M. K. & Keasling, J. D., 2017, Synthetic Biology Conference (SEED 2017) Engineering, Evolution, and Design . AIChE, American Institute of Chemical Engineers, p. 193-194 (Synthetic Biology Conference, Seed 2017: Engineering, Evolution, and Design).

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsResearchpeer-review

High-resolution scanning of optimal biosensor reporter promoters in yeast

Ambri, F., D'ambrosio, V., Di Blasi, R., Maury, J., Baallal Jacobsen, S. A., McCloskey, D., Jensen, M. K. & Keasling, J. D., 2020, In : ACS Synthetic Biology. 9, 2, p. 218-226

Research output: Contribution to journalJournal articleResearchpeer-review

Improvement of cis,cis-Muconic Acid Production in Saccharomyces cerevisiae through Biosensor-Aided Genome Engineering

Wang, G., Øzmerih, S., Guerreiro, R., Meireles, A. C., Carolas, A., Milne, N., Jensen, M. K., Ferreira, B. S. & Borodina, I., 2020, In : ACS Synthetic Biology. 9, 3, p. 634-646

Research output: Contribution to journalJournal articleResearchpeer-review

Interactions between plant RING-H2 and plant-specific NAC (NAM/ATAF1/2/CUC2) proteins: RING-H2 molecular specificity and cellular localization

Greve, K., La Cour, T., Jensen, M. K., Poulsen, F. M. & Skriver, K., 2003, In : Biochemical Journal. 371, Pt 1, p. 97-108 12 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Lighting up yeast cell factories by transcription factor-based biosensors

D'ambrosio, V. & Jensen, M. K., 2017, In : FEMS Yeast Research. 17, 7, 12 p., fox076.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
396 Downloads (Pure)

Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles

Lolle, S., Greeff, C., Petersen, K., Roux, M., Jensen, M. K., Bressendorff, S., Rodriguez, E., Sømark, K., Mundy, J. & Petersen, M., 2017, In : Cell Host & Microbe. 21, 4, p. 518-529

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
206 Downloads (Pure)

Modular 5′-UTR hexamers for context-independent tuning of protein expression in eukaryotes

Petersen, S. D., Zhang, J., Lee, J. S., Jakočiūnas, T., Grav, L. M., Kildegaard, H. F., Keasling, J. D. & Jensen, M. K., 2018, In : Nucleic acids research. 46, 21, 11 p., e127.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
168 Downloads (Pure)

Multiplex metabolic pathway engineering using CRISPR/Cas9 in Saccharomyces cerevisiae

Jakociunas, T., Bonde, I., Herrgard, M., Harrison, S. J., Kristensen, M., Pedersen, L. E., Jensen, M. K. & Keasling, J., 2015, In : Metabolic Engineering. 28, p. 213-222 10 p.

Research output: Contribution to journalJournal articleResearchpeer-review

NAC genes: Time-specific regulators of hormonal signaling in Arabidopsis

Jensen, M. K., Kjaersgaard, T., Petersen, K. & Skriver, K., 2010, In : Plant Signaling & Behavior. 5, 7, p. 907-910

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
119 Downloads (Pure)

Order by disorder in plant signaling

Kragelund, B. B., Jensen, M. K. & Skriver, K., 2012, In : Trends in Plant Science. 17, 11, p. 625-632

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
173 Downloads (Pure)

Recent applications of synthetic biology tools for yeast metabolic engineering

Jensen, M. K. & Keasling, J., 2015, In : FEMS Yeast Research. 15, 1, 10 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Regulation of basal resistance by a powdery mildew‐induced cysteine‐rich receptor‐like protein kinase in barley

Rayapuram, C., Jensen, M. K., Maiser, F., Shanir, J. V., Hornshøj, H., Rung, J. H., Gregersen, P. L., Schweizer, P., Collinge, D. & Lyngkjær, M. F., 2012, In : Molecular Plant Pathology. 13, 2, p. 135-147

Research output: Contribution to journalJournal articleResearchpeer-review

Senescence-associated Barley NAC (NAM, ATAF1,2, CUC) Transcription Factor Interacts with Radical-induced Cell Death 1 through a Disordered Regulatory Domain

Kjaersgaard, T., Jensen, M. K., Christiansen, M., Gregersen, P. L., Kragelund, B. B. & Skriver, K., 2011, In : Journal of Biological Chemistry. 286, 41, p. 35418-35429

Research output: Contribution to journalJournal articleResearchpeer-review

Structure, Function and Networks of Transcription Factors Involved in Abiotic Stress Responses.

Lindemose, S., O'Shea, C., Jensen, M. K. & Skriver, K., 2013, In : International Journal of Molecular Sciences (Online). 14, 3, p. 5842

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
169 Downloads (Pure)

Synthetic Metabolic Pathways

Jensen, M. K. (ed.) & Keasling, J. (ed.), 2018, Springer. 354 p. (Methods in Molecular Biology, Vol. 1671).

Research output: Book/ReportBookResearchpeer-review

System-level perturbations of cell metabolism using CRISPR/Cas9

Jakociunas, T., Jensen, M. K. & Keasling, J., 2017, In : Current Opinion in Biotechnology. 46, p. 134-140

Research output: Contribution to journalJournal articleResearchpeer-review

The arabidopsis thaliana NAC transcription factor family: Structure-function relationships and determinants of ANAC019 stress signalling

Jensen, M. K., Kjaersgaard, T., Nielsen, M. M., Galberg, P., Petersen, K., O'shea, C. & Skriver, K., 2010, In : Biochemical Journal. 426, 2, p. 183-196

Research output: Contribution to journalJournal articleResearchpeer-review

The Hv NAC6 transcription factor: a positive regulator of penetration resistance in barley and Arabidopsis

Jensen, M. K., Rung, J. H., Gregersen, P. L., Gjetting, T., Fuglsang, A. T., Hansen, M., Joehnk, N., Lyngkjær, M. F. & Collinge, D. B., 2007, In : Plant Molecular Biology. 65, 1-2, p. 137-150

Research output: Contribution to journalJournal articleResearchpeer-review

Transcriptional regulation by an NAC (NAM-ATAF1,2-CUC2) transcription factor attenuates ABA signalling for efficient basal defence towards Blumeria graminis f. sp hordei in Arabidopsis

Jensen, M. K., Hagedorn, P., De Torres-Zabala, M., Grant, M. R., Rung, J. H., Collinge, D. B. & Lyngkjær, M. F., 2008, In : Plant Journal. 56, 6, p. 867-880

Research output: Contribution to journalJournal articleResearchpeer-review

Transcriptional reprogramming in yeast using dCas9 and combinatorial gRNA strategies

Damgaard Jensen, E., Ferreira, R., Jakociunas, T., Arsovska, D., Zhang, J., Ding, L., Smith, J. D., David, F., Nielsen, J., Jensen, M. K. & Keasling, J. D., 2017, In : Microbial Cell Factories. 16, 16 p., 46.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
391 Downloads (Pure)

Transcriptome and genome size analysis of the venus flytrap

Jensen, M. K., Vogt, J. K., Bressendorff, S., Seguin-Orlando, A., Petersen, M., Sicheritz-Pontén, T. & Mundy, J., 2015, In : P L o S One. 10, 4, 13 p., e0123887.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
311 Downloads (Pure)

Use of prokaryotic transcriptional activators as metabolite biosensors in eukaryotic cells

Jensen, M. K., Keasling, J., Skjødt, M. L. & Snoek, T., 2018, IPC No. C12N15/67; C12N15/81, Patent No. WO2018007526 , 11 Jan 2018, Priority date 6 Jul 2016, Priority No. EP20160178220

Research output: Patent

Open Access
File
132 Downloads (Pure)