Martin Christen Frølund Thomsen

  1. 2018
  2. Published

    CHTyper, a Web Tool for Subtyping of Extraintestinal Pathogenic Escherichia coli based on the fumC and fimH Alleles. / Roer, Louise; Johannesen, Thor Bech; Hansen, Frank; Stegger, Marc; Tchesnokova, Veronika; Sokurenko, Evgeni; Garibay, Natasha; Allesøe, Rosa Lundbye; Thomsen, Martin C. F.; Lund, Ole; Hasman, Henrik; Hammerum, Anette M.

    In: Journal of Clinical Microbiology, Vol. 56, No. 4, e00063, 2018.

    Research output: Contribution to journalJournal article – Annual report year: 2018Researchpeer-review

  3. 2017
  4. Published

    Development of a web tool for Escherichia coli subtyping based on fimH alleles : Running title: Development of E. coli fimH sub-typing web-tool . / Roer, Louise; Tchesnokova, Veronika; Allesøe, Rosa Lundbye; Muradova, Mariya; Chattopadhyay, Sujay; Ahrenfeldt, Johanne; Thomsen, Martin Christen Frølund; Lund, Ole; Hansen, Frank; Hammerum, Anette Marie; Sokurenko, Evgeni; Hasman, Henrik.

    In: Journal of Clinical Microbiology, Vol. 55, No. 8, 2017, p. 2538-2543.

    Research output: Contribution to journalJournal article – Annual report year: 2017Researchpeer-review

  5. Published
  6. Published

    RUCS: Rapid identification of PCR primers for unique core sequences. / Thomsen, Martin Christen Frølund; Hasman, Henrik; Westh, Henrik; Kaya, Hülya; Lund, Ole.

    In: Bioinformatics, Vol. 33, No. 24, 2017, p. 3917-3921.

    Research output: Contribution to journalJournal article – Annual report year: 2017Researchpeer-review

  7. Published

    The CGE Tool Box. / Larsen, Mette Voldby; Joensen, Katrine Grimstrup; Zankari, Ea; Ahrenfeldt, Johanne; Lukjancenko, Oksana; Kaas, Rolf Sommer; Roer, Louise; Leekitcharoenphon, Pimlapas; Saputra, Dhany; Cosentino, S.; Thomsen, Martin Christen Frølund; Bellod Cisneros, Jose Luis; Jurtz, Vanessa Isabell; Rasmussen, Simon; Petersen, Thomas Nordahl; Hasman, Henrik; Sicheritz-Pontén, Thomas; Aarestrup, Frank Møller; Lund, Ole.

    Applied Genomics of Foodborne Pathogens. Switzerland : Springer, 2017. p. 65-90.

    Research output: Chapter in Book/Report/Conference proceedingBook chapter – Annual report year: 2017Researchpeer-review

  8. Published

    WGS-based surveillance of third-generation cephalosporin-resistant Escherichia coli from bloodstream infections in Denmark. / Roer, Louise; Hansen, Frank; Thomsen, Martin Christen Frølund; Knudsen, Jenny Dahl; Hansen, Dennis Schrøder; Wang, Mikala; Samulioniené, Jurgita; Justesen, Ulrik Stenz; Røder, Bent L; Schumacher, Helga; Østergaard, Claus; Andersen, Leif Percival; Dzajic, Esad; Søndergaard, Turid Snekloth; Stegger, Marc; Hammerum, Anette Marie; Hasman, Henrik.

    In: Journal of Antimicrobial Chemotherapy, Vol. 72, 2017, p. 1922-1929.

    Research output: Contribution to journalJournal article – Annual report year: 2017Researchpeer-review

  9. 2016
  10. Published
  11. 2015
  12. Published

    Genomic Epidemiology. / Lund, Ole; Thomsen, Martin; Bellod Cisneros, Jose Luis; Ahrenfeldt, Johanne; Tetzschner, Anna Maria Malberg; Leekitcharoenphon, Shinny; Kaas, Rolf Sommer; Lukjancenko, Oksana; Aarestrup, Frank.

    Book of Abstracts. DTU's Sustain Conference 2015. Lyngby : Technical University of Denmark (DTU), 2015. Q-7.

    Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedings – Annual report year: 2015Researchpeer-review

  13. 2013
  14. Published

    MHCcluster, a method for functional clustering of MHC molecules. / Thomsen, Martin Christen Frølund; Lundegaard, Claus; Buus, Søren; Lund, Ole; Nielsen, Morten.

    In: Immunogenetics, Vol. 65, No. 9, 2013, p. 655-665.

    Research output: Contribution to journalJournal article – Annual report year: 2013Researchpeer-review

  15. 2012
  16. Published
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