Research output per year
Research output per year
Personal profile
Profile
I'm Director of Data Science and Automation at the Novo Nordisk Foundation Center for Biosustainability. In this role I'm responsible for developing data science and automation infrastructure to support our basic research as well as commercialization-oriented research.
My research work is focused on data science for cell factory development including:
- development of workflows for high-throughput omics data generation
- mining and visualization of big biological datasets, and
- genome-scale modeling for cell factory design
Most of our research funding is from the Novo Nordisk Foundation, the European Commission Horizon 2020 program or Innovation Foundation Denmark. I coordinate the EU Horizon 2020 DD-DeCaF project focused on building bioinformatics services for data-driven desisign of cell factories and communities: http://dd-decaf.eu/ as well as project OLEFINE focusing on using cell factories to produce insect pheromones http://olefine.eu
My publications: Complete list of publications in Google Scholar
My CV: LinkedIn profile
Education/Academic qualification
Ph.D., University of California, San Diego
1999 → 2004
M.Sc., Aalto University, Finland
1993 → 1998
External positions
iLoop Core Manager, DTU
2014 → …Group leader, DTU
2012 → …Senior Scientist, Synthetic Genomics, Inc.
2008 → 2012Project Scientist, University of California, San Diego
2006 → 2008Post-doctoral researcher, University of California, San Diego
2004 → 2006Keywords
- User defined:
- Bioinformatics
- Metabolic engineering of microrganisms
- Genomic variation
- Synthetic biology
- Systems Biology
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Research output
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Adaptive laboratory evolution reveals general and specific chemical tolerance mechanisms and enhances biochemical production
Lennen, R. M., Jensen, K., Mohammed, E. T., Malla, S., Börner, R. A., Chekina, K., Özdemir, E., Bonde, I., Koza, A., Maury, J., Pedersen, L. E., Schöning, L. Y., Sonnenschein, N., Palsson, B. O., Sommer, M. O. A., Feist, A. M., Nielsen, A. T. & Herrgård, M. J., 2021, (Submitted) In : bioRxiv.Research output: Contribution to journal › Journal article › Research
File -
Addressing environmental sustainability of biochemicals
Ögmundarson, Ó., Herrgård, M. J., Forster, J., Hauschild, M. Z. & Fantke, P., 2020, In : Nature Sustainability. 3, p. 167-174Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile -
Combining Environmental and Economic Performance for Bioprocess Optimization
Ögmundarson, Ó., Sukumara, S., Herrgård, M. J. & Fantke, P., 2020, In : Trends in Biotechnology. 38, 11, p. 1203-1214Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile -
CRISPR interference of nucleotide biosynthesis improves production of a single-domain antibody in Escherichia coli
Landberg, J. M., Wright, N. R., Wulff, T., Herrgård, M. J. & Nielsen, A. T., 2020, In : Biotechnology and Bioengineering. 117, 12, p. 3835-3848 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile -
Dietary Change Enables Robust Growth-Coupling of Heterologous Methyltransferase Activity in Yeast
Hansen, A. S. L., Dunham, M. J., Arsovska, D., Zhang, J., Keasling, J. D., Herrgard, M. J. & Jensen, M. K., 2020, In : ACS Synthetic Biology. 9, p. 3408-3415 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
Projects
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Discovery, Engineering, and Application of Transport Systems via Adaptive Laboratory Evolution
Radi, M., Feist, A. & Herrgard, M.
01/03/2019 → 28/02/2022
Project: PhD
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Understanding evolution of metabolsim using kinetic modelling framework
Shepelin, D., Nielsen, L. K., Sommer, M. O. A. & Herrgard, M.
01/09/2018 → 31/08/2021
Project: PhD
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OLEFINE: OLEAginous yeast platforms for FINE chemicals
Herrgard, M., Borodina, I., Rasmussen, B. K. & Lohmann, R.
01/01/2018 → 31/12/2021
Project: Research
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Synthetic growth-coupling for evolutionary engineering in microbial cells
Hansen, A. S. L., Jensen, M. K., Herrgard, M., Keasling, J., Mussatto, S. I., Siewers, V. & Kao, K. C.
01/10/2016 → 08/02/2021
Project: PhD
Activities
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5th Conference on Constraint-based Reconstruction and Analysis
Markus Herrgard (Organizer)
14 Oct 2018 → 16 Oct 2018Activity: Attending an event › Participating in or organising a conference
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Designing and evolving cell factories for chemical production
Markus Herrgard (Guest lecturer)
1 Jun 2018Activity: Talks and presentations › Conference presentations
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High Tech Summit 2018
Markus Herrgard (Organizer)
10 Oct 2018 → 11 Oct 2018Activity: Attending an event › Participating in or organising a conference
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Data science for industrial biotechnology
Markus Herrgard (Guest lecturer)
11 Oct 2018Activity: Talks and presentations › Conference presentations
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Data-driven Biotechnology
Joao Cardoso (Participant), Ahmad A. Zeidan (Participant), Markus Herrgard (Participant) & Nikolaus Sonnenschein (Participant)
9 May 2017 → 10 May 2017Activity: Attending an event › Participating in or organising a conference